miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 137925 0.75 0.241932
Target:  5'- cGAGCGGGCCCgGCUgcggCGgcGGCUgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa---GC--UCGA-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 136643 0.67 0.64635
Target:  5'- aAGGCcuGGUCCGCcUgGAGCUCGAUg- -3'
miRNA:   3'- -UUCGc-CCGGGCGaAgCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 136612 0.67 0.626082
Target:  5'- gGAGCGGcGCgCGCgcgcCGAGggCGGCGGg -3'
miRNA:   3'- -UUCGCC-CGgGCGaa--GCUCgaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 135083 0.66 0.706623
Target:  5'- cGGCGGGCUCGCggCccggcggcgGAGCgcgaGGCGGa -3'
miRNA:   3'- uUCGCCCGGGCGaaG---------CUCGag--CUGUC- -5'
23799 5' -60 NC_005261.1 + 135014 0.74 0.266005
Target:  5'- cGGCGGGCCCGCacgCG-GCcgCGGCGGc -3'
miRNA:   3'- uUCGCCCGGGCGaa-GCuCGa-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 130470 0.66 0.676648
Target:  5'- cGAGC-GGCUCGCggCGuGCcUCGGCGGc -3'
miRNA:   3'- -UUCGcCCGGGCGaaGCuCG-AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 128802 0.69 0.526128
Target:  5'- --cCGGGCCCGCggCGGGgCUCGcgcuGCGGc -3'
miRNA:   3'- uucGCCCGGGCGaaGCUC-GAGC----UGUC- -5'
23799 5' -60 NC_005261.1 + 127920 0.67 0.636217
Target:  5'- uGGGCucGGGCCCGC-UCGAuGCggCGcACAGc -3'
miRNA:   3'- -UUCG--CCCGGGCGaAGCU-CGa-GC-UGUC- -5'
23799 5' -60 NC_005261.1 + 127815 0.66 0.666573
Target:  5'- cGGCGGG-CCGC-UCGcGCUCG-CGGc -3'
miRNA:   3'- uUCGCCCgGGCGaAGCuCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 127754 0.67 0.605832
Target:  5'- gGAGCGGG-CCGCggCGGGCgcgaaGACGc -3'
miRNA:   3'- -UUCGCCCgGGCGaaGCUCGag---CUGUc -5'
23799 5' -60 NC_005261.1 + 125749 0.69 0.526128
Target:  5'- gGGGCcgGGGCCaggGCUgccgCGGGCUCGGCu- -3'
miRNA:   3'- -UUCG--CCCGGg--CGAa---GCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 123420 0.7 0.432757
Target:  5'- gGGGCGGGCUCGCcaCGGGC-CG-CAGc -3'
miRNA:   3'- -UUCGCCCGGGCGaaGCUCGaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 121775 0.66 0.666573
Target:  5'- cGGUGGGguggCCGCggccggCGGGCUgGGCAGg -3'
miRNA:   3'- uUCGCCCg---GGCGaa----GCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 121394 0.69 0.516412
Target:  5'- cGGCGGcGCCUGCc-CGAGUgCGACGGc -3'
miRNA:   3'- uUCGCC-CGGGCGaaGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 117682 0.68 0.595733
Target:  5'- cGGcCGGGCCCGCggCGAGgC-CGGCc- -3'
miRNA:   3'- uUC-GCCCGGGCGaaGCUC-GaGCUGuc -5'
23799 5' -60 NC_005261.1 + 116489 0.67 0.636217
Target:  5'- gGGGCGGGCgCGCgguauaaaGAGCgccgccgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGgGCGaag-----CUCGa------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 115423 0.66 0.676648
Target:  5'- cAGcCGGGgCCGCggccCGAGCUCGcgcucGCGGc -3'
miRNA:   3'- uUC-GCCCgGGCGaa--GCUCGAGC-----UGUC- -5'
23799 5' -60 NC_005261.1 + 111414 0.67 0.605832
Target:  5'- cGGGCGGGCCacaCGCcggCGGGCaagaGACGGa -3'
miRNA:   3'- -UUCGCCCGG---GCGaa-GCUCGag--CUGUC- -5'
23799 5' -60 NC_005261.1 + 109874 0.66 0.676648
Target:  5'- cAGCGGGgCCCGCgggCGGGCgcccCGGg -3'
miRNA:   3'- uUCGCCC-GGGCGaa-GCUCGagcuGUC- -5'
23799 5' -60 NC_005261.1 + 107257 0.67 0.656471
Target:  5'- -cGCGGGCgCGCgggcacgggCGGGCgcgcaucaggCGGCAGg -3'
miRNA:   3'- uuCGCCCGgGCGaa-------GCUCGa---------GCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.