miRNA display CGI


Results 1 - 20 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 3' -64.6 NC_005261.1 + 12652 0.66 0.526458
Target:  5'- gGGGCCGCgccGGCGCGacaucGUCGuccucGAGCGgGu -3'
miRNA:   3'- -CCCGGCG---CCGCGC-----CGGCuu---CUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 86472 0.66 0.526458
Target:  5'- -cGCCGUugauGGaCGCGGCCGGgccGGCGCc -3'
miRNA:   3'- ccCGGCG----CC-GCGCCGGCUuc-UCGCGu -5'
23800 3' -64.6 NC_005261.1 + 9639 0.66 0.526458
Target:  5'- gGGGCUGggugGGCGgGGCCcacucgGgcGGGCGCc -3'
miRNA:   3'- -CCCGGCg---CCGCgCCGG------CuuCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 133340 0.66 0.526458
Target:  5'- cGGCaCGCGcGCGCGGCgcugccGCGCAg -3'
miRNA:   3'- cCCG-GCGC-CGCGCCGgcuucuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 3456 0.66 0.526458
Target:  5'- cGGGCCGCcGCGCcGCgCGucGAGUaccGCGc -3'
miRNA:   3'- -CCCGGCGcCGCGcCG-GCuuCUCG---CGU- -5'
23800 3' -64.6 NC_005261.1 + 83039 0.66 0.526458
Target:  5'- aGGGCCGCu-CGCcGCgGGAGGGgGCu -3'
miRNA:   3'- -CCCGGCGccGCGcCGgCUUCUCgCGu -5'
23800 3' -64.6 NC_005261.1 + 37007 0.66 0.526458
Target:  5'- cGGGCUGC-GCGgGGCCaguuugcGGGGGCGgGa -3'
miRNA:   3'- -CCCGGCGcCGCgCCGGc------UUCUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 29334 0.66 0.526458
Target:  5'- cGGCCGCGuGCGCuucGGCgGcgcGGGCGaCAc -3'
miRNA:   3'- cCCGGCGC-CGCG---CCGgCuu-CUCGC-GU- -5'
23800 3' -64.6 NC_005261.1 + 105364 0.66 0.525524
Target:  5'- aGGCCgugacagGCGGCGCGcGCgGGu--GCGCGc -3'
miRNA:   3'- cCCGG-------CGCCGCGC-CGgCUucuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 127359 0.66 0.525524
Target:  5'- uGGGCCcgcGUGGCuaggaugucguugGCGGCggCGAGGAGCccgGCGc -3'
miRNA:   3'- -CCCGG---CGCCG-------------CGCCG--GCUUCUCG---CGU- -5'
23800 3' -64.6 NC_005261.1 + 64914 0.66 0.517142
Target:  5'- uGGUucagCGCGGCGUGcuccugcucGCCGcccAGGGGCGCGu -3'
miRNA:   3'- cCCG----GCGCCGCGC---------CGGC---UUCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 86888 0.66 0.517142
Target:  5'- uGGCCGCGcccugguccgcGCGCGGCgCGGAcccGCGUc -3'
miRNA:   3'- cCCGGCGC-----------CGCGCCG-GCUUcu-CGCGu -5'
23800 3' -64.6 NC_005261.1 + 33839 0.66 0.517142
Target:  5'- nGGGCCcccUGGCGCugggcgGGCCG-GGAGgGCc -3'
miRNA:   3'- -CCCGGc--GCCGCG------CCGGCuUCUCgCGu -5'
23800 3' -64.6 NC_005261.1 + 118436 0.66 0.517142
Target:  5'- -cGCCGCGGaCGCcGCCGc--GGCGCu -3'
miRNA:   3'- ccCGGCGCC-GCGcCGGCuucUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 74463 0.66 0.517142
Target:  5'- gGGcGCCGCccccGGCGCGGCgUGccuGGGCGgGa -3'
miRNA:   3'- -CC-CGGCG----CCGCGCCG-GCuu-CUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 84250 0.66 0.517142
Target:  5'- aGGUCGgGGCGCuuGGCCcccGGcauGGCGCAg -3'
miRNA:   3'- cCCGGCgCCGCG--CCGGcu-UC---UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 98159 0.66 0.517142
Target:  5'- aGGCCGCGG-GCGGCgGGu--GUGUc -3'
miRNA:   3'- cCCGGCGCCgCGCCGgCUucuCGCGu -5'
23800 3' -64.6 NC_005261.1 + 104836 0.66 0.517142
Target:  5'- gGGGCCGCGccaCGCGGaCCGcgcGGGUcacGCAc -3'
miRNA:   3'- -CCCGGCGCc--GCGCC-GGCuu-CUCG---CGU- -5'
23800 3' -64.6 NC_005261.1 + 42921 0.66 0.517142
Target:  5'- gGGGCCGCcgggcgagugGGUGCGGauccacCCGAcgccGCGCAc -3'
miRNA:   3'- -CCCGGCG----------CCGCGCC------GGCUucu-CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 17568 0.66 0.517142
Target:  5'- cGGCgGUGGCcuuGCGGgCGAgcuGGcaAGCGCAg -3'
miRNA:   3'- cCCGgCGCCG---CGCCgGCU---UC--UCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.