miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 60250 0.65 0.719975
Target:  5'- gCCGCGgcgggagcggcggCCgugaaGAgGCGC-CCGGGGuCCg -3'
miRNA:   3'- -GGCGUa------------GGa----CUgCGCGcGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 118431 0.66 0.714285
Target:  5'- gUCGCcgCCgcgGACGC-CGCCGcGGcGCUa -3'
miRNA:   3'- -GGCGuaGGa--CUGCGcGCGGC-CCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 134147 0.66 0.714285
Target:  5'- gCUGCG-CCUGGCGCcacCCGGGGcuGCUg -3'
miRNA:   3'- -GGCGUaGGACUGCGcgcGGCCCC--UGG- -5'
23802 3' -61.4 NC_005261.1 + 128862 0.66 0.714285
Target:  5'- cCCGCcucGUCgCUGcCGaCGacgaGgCGGGGGCCg -3'
miRNA:   3'- -GGCG---UAG-GACuGC-GCg---CgGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 14163 0.66 0.714285
Target:  5'- gCCGCGaaC-GGCGCGCGUCucGGGGCg -3'
miRNA:   3'- -GGCGUagGaCUGCGCGCGGc-CCCUGg -5'
23802 3' -61.4 NC_005261.1 + 75833 0.66 0.714285
Target:  5'- gCCGCGcCCggggaggGGCGCgcgGCGCCGacGGcGGCCc -3'
miRNA:   3'- -GGCGUaGGa------CUGCG---CGCGGC--CC-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 48899 0.66 0.714285
Target:  5'- gCCGCAguuggCCUcuaGCGCGagcCCGGGcGCCa -3'
miRNA:   3'- -GGCGUa----GGAcugCGCGC---GGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 106361 0.66 0.714285
Target:  5'- gCCGCcgCgCUGACGC-CGCCGuc-GCCg -3'
miRNA:   3'- -GGCGuaG-GACUGCGcGCGGCcccUGG- -5'
23802 3' -61.4 NC_005261.1 + 9973 0.66 0.714285
Target:  5'- cCCGCccCCccgGACGCGCcUCGGcGcGGCCa -3'
miRNA:   3'- -GGCGuaGGa--CUGCGCGcGGCC-C-CUGG- -5'
23802 3' -61.4 NC_005261.1 + 94888 0.66 0.714285
Target:  5'- cCCGCGUgcagCCacacGCGCGCGCUGGaGGCg -3'
miRNA:   3'- -GGCGUA----GGac--UGCGCGCGGCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 73121 0.66 0.714285
Target:  5'- cCCGCGUCCgcGCGgucccCGgGCCGGGcucgcGCCg -3'
miRNA:   3'- -GGCGUAGGacUGC-----GCgCGGCCCc----UGG- -5'
23802 3' -61.4 NC_005261.1 + 10205 0.66 0.714285
Target:  5'- aCCGCGugcUCCcagGGCcCGCGCCugcccaGGcGGGCCc -3'
miRNA:   3'- -GGCGU---AGGa--CUGcGCGCGG------CC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 95798 0.66 0.714285
Target:  5'- gCUGCuagCC-GGCGC-CGgCGGGGGCUc -3'
miRNA:   3'- -GGCGua-GGaCUGCGcGCgGCCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 29242 0.66 0.713334
Target:  5'- gCCGCGgcgCCgcgcGACGgGCcgccgccGCUGGaGGGCCc -3'
miRNA:   3'- -GGCGUa--GGa---CUGCgCG-------CGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 89642 0.66 0.704751
Target:  5'- uCCGCGUCUccGACGCGgGCCaGa-ACCg -3'
miRNA:   3'- -GGCGUAGGa-CUGCGCgCGGcCccUGG- -5'
23802 3' -61.4 NC_005261.1 + 10542 0.66 0.704751
Target:  5'- gCUGUcgCCcccGGCGCGCcuGCCGggcccacucuuuGGGGCCg -3'
miRNA:   3'- -GGCGuaGGa--CUGCGCG--CGGC------------CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 118635 0.66 0.704751
Target:  5'- gCCGCGgcggcgCuCUGGgccccgggcCGCGCGCUcGGGGCUg -3'
miRNA:   3'- -GGCGUa-----G-GACU---------GCGCGCGGcCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 48317 0.66 0.704751
Target:  5'- gCGCGUCg-GGCcCGgGCuCGGGGGCg -3'
miRNA:   3'- gGCGUAGgaCUGcGCgCG-GCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 39321 0.66 0.704751
Target:  5'- cUCGCGUCCaacCGCGcCGCCGcGG-CCa -3'
miRNA:   3'- -GGCGUAGGacuGCGC-GCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 107735 0.66 0.704751
Target:  5'- gCUGCG-CCUcGGC-CGCGggGGGGGCCa -3'
miRNA:   3'- -GGCGUaGGA-CUGcGCGCggCCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.