miRNA display CGI


Results 1 - 20 of 358 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 22721 0.66 0.573881
Target:  5'- gGAGcCGGaggaCCaGCGccagucggGCGCGGGGCgGCg -3'
miRNA:   3'- gCUC-GCCga--GG-CGC--------UGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 50003 0.66 0.573881
Target:  5'- cCGAGCcGCgCCGCcaGCGCGcGGGC-GCc -3'
miRNA:   3'- -GCUCGcCGaGGCGc-UGCGC-CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 132156 0.66 0.573881
Target:  5'- uCGAGCGcGCcgCCGCugcaGGCaGCGcGGGCggggGCc -3'
miRNA:   3'- -GCUCGC-CGa-GGCG----CUG-CGC-CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 37217 0.66 0.573881
Target:  5'- --uGUGGCUcCCGCGggcuuGCGCGGcGCgGCg -3'
miRNA:   3'- gcuCGCCGA-GGCGC-----UGCGCCcCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 74806 0.66 0.573881
Target:  5'- uCGA--GGC-CCGCGugGCGGaGGUgGCc -3'
miRNA:   3'- -GCUcgCCGaGGCGCugCGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 29180 0.66 0.573881
Target:  5'- aGGGCccGGCgcccucgCCGCGGCGCccgcgcGGGC-GCg -3'
miRNA:   3'- gCUCG--CCGa------GGCGCUGCGc-----CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 24672 0.66 0.573881
Target:  5'- -cAGgGGaugCCGgGACGgGGGGCgggUGCa -3'
miRNA:   3'- gcUCgCCga-GGCgCUGCgCCCCG---ACG- -5'
23804 3' -63.8 NC_005261.1 + 118381 0.66 0.573881
Target:  5'- gCGcGCGGC-CCGaGGCGCuGGcGGCcGCg -3'
miRNA:   3'- -GCuCGCCGaGGCgCUGCG-CC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 29973 0.66 0.573881
Target:  5'- gCGGcGCGGUgcgCCGcCGGCGCGuccGGCaGCg -3'
miRNA:   3'- -GCU-CGCCGa--GGC-GCUGCGCc--CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 107730 0.66 0.573881
Target:  5'- -aGGCGGCUgCGCcucGGcCGCGGGGgggGCc -3'
miRNA:   3'- gcUCGCCGAgGCG---CU-GCGCCCCga-CG- -5'
23804 3' -63.8 NC_005261.1 + 50996 0.66 0.573881
Target:  5'- -cGGCGGCg-CGUgGGCGCGGcGGgaGCu -3'
miRNA:   3'- gcUCGCCGagGCG-CUGCGCC-CCgaCG- -5'
23804 3' -63.8 NC_005261.1 + 43574 0.66 0.572921
Target:  5'- gCGAGCGGCgcuucgccgUgCGCGACGCcgucuccggcgagGaGGGCgagUGCu -3'
miRNA:   3'- -GCUCGCCG---------AgGCGCUGCG-------------C-CCCG---ACG- -5'
23804 3' -63.8 NC_005261.1 + 52196 0.66 0.568128
Target:  5'- -uGGCGaGCcCCGCGGCggcucaguacaccucGCGGcGCUGCg -3'
miRNA:   3'- gcUCGC-CGaGGCGCUG---------------CGCCcCGACG- -5'
23804 3' -63.8 NC_005261.1 + 5411 0.66 0.565257
Target:  5'- gCGGGCGccGCgaacgaaggagacgaCCGCGGcCGCGGcGGCgGCa -3'
miRNA:   3'- -GCUCGC--CGa--------------GGCGCU-GCGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 67958 0.66 0.564301
Target:  5'- uCGcGCGGCcgCCGCGGCGauGGaGUUcGCu -3'
miRNA:   3'- -GCuCGCCGa-GGCGCUGCgcCC-CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 94993 0.66 0.564301
Target:  5'- cCGcGCGcGCcCCGCccUGCGGGGCggGCu -3'
miRNA:   3'- -GCuCGC-CGaGGCGcuGCGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 74338 0.66 0.564301
Target:  5'- cCGAGaccgcaGGCgCgGCGGCGgaaGGGGCgGCc -3'
miRNA:   3'- -GCUCg-----CCGaGgCGCUGCg--CCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 32114 0.66 0.564301
Target:  5'- gCGAgGCGGCcagccaCCGCGcCGCcaaccgcugGGGGCUcgGCg -3'
miRNA:   3'- -GCU-CGCCGa-----GGCGCuGCG---------CCCCGA--CG- -5'
23804 3' -63.8 NC_005261.1 + 116008 0.66 0.564301
Target:  5'- cCGAgGCGGCcugagccgCCGaCGGCGCGcauGGuCUGCg -3'
miRNA:   3'- -GCU-CGCCGa-------GGC-GCUGCGCc--CC-GACG- -5'
23804 3' -63.8 NC_005261.1 + 133348 0.66 0.564301
Target:  5'- gCGcGCGGCgCUGCcGCGCaGGGCUucgGCu -3'
miRNA:   3'- -GCuCGCCGaGGCGcUGCGcCCCGA---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.