miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 137976 0.68 0.890003
Target:  5'- nCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 137940 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 137049 0.66 0.958441
Target:  5'- gGGCGgACcgUCGGCagGCGCGGAGgCgcggGCa -3'
miRNA:   3'- gCUGCaUGa-AGCUG--CGCGCCUC-Ga---UG- -5'
23804 5' -54.2 NC_005261.1 + 135079 0.66 0.958441
Target:  5'- cCGGCGgcggGCUcgCGGCccgGCgGCGGAGCgcgagGCg -3'
miRNA:   3'- -GCUGCa---UGAa-GCUG---CG-CGCCUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 134291 0.72 0.699697
Target:  5'- gGGCGUGgguccacgucgccgcCUUCGcCGCGCuGGAGCUGg -3'
miRNA:   3'- gCUGCAU---------------GAAGCuGCGCG-CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 134198 0.71 0.745629
Target:  5'- uGGCGcgGCU-CGGCGCGCGGGucGCgGCg -3'
miRNA:   3'- gCUGCa-UGAaGCUGCGCGCCU--CGaUG- -5'
23804 5' -54.2 NC_005261.1 + 132103 0.69 0.868513
Target:  5'- gGGCG-GCcgCGACGCGCucguGGAGCgggACg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCG----CCUCGa--UG- -5'
23804 5' -54.2 NC_005261.1 + 131917 0.66 0.954612
Target:  5'- gGACGgGCUuuUUGGCGCGCGcGGGaCcGCg -3'
miRNA:   3'- gCUGCaUGA--AGCUGCGCGC-CUC-GaUG- -5'
23804 5' -54.2 NC_005261.1 + 130480 0.7 0.802176
Target:  5'- gCGGCGUGCcUCGGCG-GCGaGGGCcccgACg -3'
miRNA:   3'- -GCUGCAUGaAGCUGCgCGC-CUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 127683 0.71 0.774486
Target:  5'- gCGGCGgccGCUgcccCGGCgGCGCcggaGGAGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUG-CGCG----CCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 119789 0.67 0.926662
Target:  5'- -cGCGUACcgCa--GCGCGGAGCUGg -3'
miRNA:   3'- gcUGCAUGaaGcugCGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 118584 0.68 0.890003
Target:  5'- gCGGCGcGCgcCGcCGcCGCGGAGCUcGCg -3'
miRNA:   3'- -GCUGCaUGaaGCuGC-GCGCCUCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 117903 0.66 0.954612
Target:  5'- aGACGggugagCGGCuGCGCGGgaacgaaggccGGCUGCg -3'
miRNA:   3'- gCUGCaugaa-GCUG-CGCGCC-----------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 117384 0.67 0.926122
Target:  5'- aGGCGcgcUGCUUCGGCgggGCGCccgacuuucggcuGGAGCUGg -3'
miRNA:   3'- gCUGC---AUGAAGCUG---CGCG-------------CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 117087 0.7 0.793091
Target:  5'- uCGGCGaguacucgaucaUGCUccCGACGCGCGGcGCUGa -3'
miRNA:   3'- -GCUGC------------AUGAa-GCUGCGCGCCuCGAUg -5'
23804 5' -54.2 NC_005261.1 + 114272 0.74 0.561985
Target:  5'- aCGACGcgg--UGGCGCGCGcGGGCUACg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGC-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 112154 0.7 0.818127
Target:  5'- gCGACGccgaucaugcuCUUCGccggccGCGCGCGGGGCUcGCu -3'
miRNA:   3'- -GCUGCau---------GAAGC------UGCGCGCCUCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 110239 0.67 0.921156
Target:  5'- gCGugGgcgGCg-CGGCGCccGgGGGGCUGCg -3'
miRNA:   3'- -GCugCa--UGaaGCUGCG--CgCCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 108178 0.68 0.8759
Target:  5'- gGGCGcGCggccgCGGCuccggGCGCGaGAGCUGCg -3'
miRNA:   3'- gCUGCaUGaa---GCUG-----CGCGC-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 106400 0.66 0.958441
Target:  5'- uCGGCG-ACaUC--CGCGCGGcGCUGCa -3'
miRNA:   3'- -GCUGCaUGaAGcuGCGCGCCuCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.