miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23805 5' -54.3 NC_005261.1 + 29404 0.66 0.926614
Target:  5'- -gCGGCCGCGcGCUACgcggcggCCGCGgGGc -3'
miRNA:   3'- aaGCUGGUGU-CGAUGaa-----GGUGCgCUa -5'
23805 5' -54.3 NC_005261.1 + 28835 0.66 0.926614
Target:  5'- -gCGGCCGCGGCUgagGCggCCGuCGUGGc -3'
miRNA:   3'- aaGCUGGUGUCGA---UGaaGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 64038 0.66 0.926614
Target:  5'- gUCGG-CGCGGCU-CUgcgCCGCGUGGUg -3'
miRNA:   3'- aAGCUgGUGUCGAuGAa--GGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 83612 0.66 0.926614
Target:  5'- cUCcGCCGCGGCguggUCCAgCGCGAg -3'
miRNA:   3'- aAGcUGGUGUCGaugaAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 58954 0.66 0.926614
Target:  5'- cUCGGCCAgCAGCgccucgGCgcCCGCGuCGAa -3'
miRNA:   3'- aAGCUGGU-GUCGa-----UGaaGGUGC-GCUa -5'
23805 5' -54.3 NC_005261.1 + 31989 0.66 0.926614
Target:  5'- -gCGcACCGCGGUgcccgUGCcgCCGCGCGAg -3'
miRNA:   3'- aaGC-UGGUGUCG-----AUGaaGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 50928 0.66 0.926059
Target:  5'- -cCGGgCGCGGggcucccCUGCUUCUACGCGGc -3'
miRNA:   3'- aaGCUgGUGUC-------GAUGAAGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 122359 0.66 0.920953
Target:  5'- -gCGGCCGCGGCUcgcGCggccCCACcGCGGc -3'
miRNA:   3'- aaGCUGGUGUCGA---UGaa--GGUG-CGCUa -5'
23805 5' -54.3 NC_005261.1 + 107495 0.66 0.920953
Target:  5'- -gCGGCaGCAGCUGCg-CCACGCa-- -3'
miRNA:   3'- aaGCUGgUGUCGAUGaaGGUGCGcua -5'
23805 5' -54.3 NC_005261.1 + 123715 0.66 0.915035
Target:  5'- cUCGGCCAuCAGCaGCgUCguCGCGGUc -3'
miRNA:   3'- aAGCUGGU-GUCGaUGaAGguGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 74549 0.66 0.915035
Target:  5'- gUUUGccuGCCugGGCguggACaUCCACGCGGUc -3'
miRNA:   3'- -AAGC---UGGugUCGa---UGaAGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 71111 0.66 0.915035
Target:  5'- -aCGGCgCGCAGCuUGCgcCCGCGCGc- -3'
miRNA:   3'- aaGCUG-GUGUCG-AUGaaGGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 65785 0.66 0.915035
Target:  5'- -cCGACCGCGGCgggaACaUCCGCGgGu- -3'
miRNA:   3'- aaGCUGGUGUCGa---UGaAGGUGCgCua -5'
23805 5' -54.3 NC_005261.1 + 106300 0.66 0.902435
Target:  5'- gUCGACCuCGGCgagcagguCUUCCGuCGUGAg -3'
miRNA:   3'- aAGCUGGuGUCGau------GAAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 15473 0.66 0.902435
Target:  5'- cUCGACCGCGGCgga---CACGCGc- -3'
miRNA:   3'- aAGCUGGUGUCGaugaagGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 88505 0.67 0.895756
Target:  5'- cUCGACC-CGcGCUucgagcGCUUCCACGUGu- -3'
miRNA:   3'- aAGCUGGuGU-CGA------UGAAGGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 67137 0.67 0.895756
Target:  5'- -cCGACCGCGGCgcccguuuuaUAC--CCACGCGGc -3'
miRNA:   3'- aaGCUGGUGUCG----------AUGaaGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 95502 0.67 0.888831
Target:  5'- aUCGAcCCGCGGCca-UUCCGCGCc-- -3'
miRNA:   3'- aAGCU-GGUGUCGaugAAGGUGCGcua -5'
23805 5' -54.3 NC_005261.1 + 42388 0.67 0.888831
Target:  5'- -cCGGCC-CAGCUGCgccUgCACGUGGUu -3'
miRNA:   3'- aaGCUGGuGUCGAUGa--AgGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 39026 0.67 0.888831
Target:  5'- -gCGuCCGCgAGCaGC-UCCACGCGGUg -3'
miRNA:   3'- aaGCuGGUG-UCGaUGaAGGUGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.