miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 118574 0.66 0.625913
Target:  5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3'
miRNA:   3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 3547 0.66 0.625913
Target:  5'- -cGCGCaGCGCGG--CGGGCgCggcgCCGc -3'
miRNA:   3'- gaCGCG-CGCGCCuaGCCCGgGaa--GGC- -5'
23807 5' -62.6 NC_005261.1 + 40361 0.66 0.625913
Target:  5'- gCU-CGCGCaGCGGGUUGaGGUUCaUCCGg -3'
miRNA:   3'- -GAcGCGCG-CGCCUAGC-CCGGGaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 72857 0.66 0.625913
Target:  5'- -aGCGCccagGCGUGGAccgCGGGCaggUCCGc -3'
miRNA:   3'- gaCGCG----CGCGCCUa--GCCCGggaAGGC- -5'
23807 5' -62.6 NC_005261.1 + 39350 0.66 0.62003
Target:  5'- gCUGCGCGCgGCGGcagccgccucAUCGgcggccggggagggcGGCCCUggCGg -3'
miRNA:   3'- -GACGCGCG-CGCC----------UAGC---------------CCGGGAagGC- -5'
23807 5' -62.6 NC_005261.1 + 16714 0.66 0.61611
Target:  5'- -aGCGCGCGCcGGUaCuGGCCCUcggcgagCCGc -3'
miRNA:   3'- gaCGCGCGCGcCUA-GcCCGGGAa------GGC- -5'
23807 5' -62.6 NC_005261.1 + 88463 0.66 0.61611
Target:  5'- gUGaGCGUGUGGG-CGGGCCgUgCCGc -3'
miRNA:   3'- gACgCGCGCGCCUaGCCCGGgAaGGC- -5'
23807 5' -62.6 NC_005261.1 + 99722 0.66 0.61611
Target:  5'- -cGCGCGCGUGGccgcGUCaGGCgCgugCCGc -3'
miRNA:   3'- gaCGCGCGCGCC----UAGcCCGgGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 63367 0.66 0.61611
Target:  5'- -gGCGCgGUGCGGGUgugcCGGgucGCCCUggCCGu -3'
miRNA:   3'- gaCGCG-CGCGCCUA----GCC---CGGGAa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 109527 0.66 0.61611
Target:  5'- uUGCGCGCcCGccgCGGGCCCccucgCCa -3'
miRNA:   3'- gACGCGCGcGCcuaGCCCGGGaa---GGc -5'
23807 5' -62.6 NC_005261.1 + 74481 0.66 0.606319
Target:  5'- -gGCGUGCcuggGCGGGaucUCGGcGCUCUUCgGg -3'
miRNA:   3'- gaCGCGCG----CGCCU---AGCC-CGGGAAGgC- -5'
23807 5' -62.6 NC_005261.1 + 118987 0.66 0.606319
Target:  5'- gCUGUGCuucuGCGuCGGGgccugcUGGGCCCgcgCCGa -3'
miRNA:   3'- -GACGCG----CGC-GCCUa-----GCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 21196 0.66 0.606319
Target:  5'- -aGCGCGgcCGCGGAcgCuGGCCCcggCCGc -3'
miRNA:   3'- gaCGCGC--GCGCCUa-GcCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 133944 0.66 0.606319
Target:  5'- cCUGCGCcagGCGCGGcgCauguucGGCCUUUgCCGc -3'
miRNA:   3'- -GACGCG---CGCGCCuaGc-----CCGGGAA-GGC- -5'
23807 5' -62.6 NC_005261.1 + 135652 0.66 0.606319
Target:  5'- cCUGCGCggGCGCGGG-CGG-CCCUcgCuCGa -3'
miRNA:   3'- -GACGCG--CGCGCCUaGCCcGGGAa-G-GC- -5'
23807 5' -62.6 NC_005261.1 + 34683 0.66 0.606319
Target:  5'- -aGCGCGCuGCGuGAcggUGGGCCCcUCg- -3'
miRNA:   3'- gaCGCGCG-CGC-CUa--GCCCGGGaAGgc -5'
23807 5' -62.6 NC_005261.1 + 74349 0.66 0.596545
Target:  5'- -gGCGCgGCgGCGGAagGGGCggCCgcgUCCGc -3'
miRNA:   3'- gaCGCG-CG-CGCCUagCCCG--GGa--AGGC- -5'
23807 5' -62.6 NC_005261.1 + 58490 0.66 0.596545
Target:  5'- -gGCcgGCGCGCGGccgcuuUUGGcGCCCgcgUCCa -3'
miRNA:   3'- gaCG--CGCGCGCCu-----AGCC-CGGGa--AGGc -5'
23807 5' -62.6 NC_005261.1 + 98273 0.66 0.596545
Target:  5'- -gGCGCGCGCGu-UCGacGCCCggcgcgUCCGc -3'
miRNA:   3'- gaCGCGCGCGCcuAGCc-CGGGa-----AGGC- -5'
23807 5' -62.6 NC_005261.1 + 23629 0.66 0.596545
Target:  5'- -gGCGCgGCGgGGGUCGGGCgg--CUGg -3'
miRNA:   3'- gaCGCG-CGCgCCUAGCCCGggaaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.