Results 1 - 20 of 115 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 72857 | 0.66 | 0.625913 |
Target: 5'- -aGCGCccagGCGUGGAccgCGGGCaggUCCGc -3' miRNA: 3'- gaCGCG----CGCGCCUa--GCCCGggaAGGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 40361 | 0.66 | 0.625913 |
Target: 5'- gCU-CGCGCaGCGGGUUGaGGUUCaUCCGg -3' miRNA: 3'- -GAcGCGCG-CGCCUAGC-CCGGGaAGGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 3547 | 0.66 | 0.625913 |
Target: 5'- -cGCGCaGCGCGG--CGGGCgCggcgCCGc -3' miRNA: 3'- gaCGCG-CGCGCCuaGCCCGgGaa--GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 118574 | 0.66 | 0.625913 |
Target: 5'- -cGCGCGCGCGG--CGGcGCgCgccgCCGc -3' miRNA: 3'- gaCGCGCGCGCCuaGCC-CGgGaa--GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 39350 | 0.66 | 0.62003 |
Target: 5'- gCUGCGCGCgGCGGcagccgccucAUCGgcggccggggagggcGGCCCUggCGg -3' miRNA: 3'- -GACGCGCG-CGCC----------UAGC---------------CCGGGAagGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 109527 | 0.66 | 0.61611 |
Target: 5'- uUGCGCGCcCGccgCGGGCCCccucgCCa -3' miRNA: 3'- gACGCGCGcGCcuaGCCCGGGaa---GGc -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 88463 | 0.66 | 0.61611 |
Target: 5'- gUGaGCGUGUGGG-CGGGCCgUgCCGc -3' miRNA: 3'- gACgCGCGCGCCUaGCCCGGgAaGGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 16714 | 0.66 | 0.61611 |
Target: 5'- -aGCGCGCGCcGGUaCuGGCCCUcggcgagCCGc -3' miRNA: 3'- gaCGCGCGCGcCUA-GcCCGGGAa------GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 63367 | 0.66 | 0.61611 |
Target: 5'- -gGCGCgGUGCGGGUgugcCGGgucGCCCUggCCGu -3' miRNA: 3'- gaCGCG-CGCGCCUA----GCC---CGGGAa-GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 99722 | 0.66 | 0.61611 |
Target: 5'- -cGCGCGCGUGGccgcGUCaGGCgCgugCCGc -3' miRNA: 3'- gaCGCGCGCGCC----UAGcCCGgGaa-GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 135652 | 0.66 | 0.606319 |
Target: 5'- cCUGCGCggGCGCGGG-CGG-CCCUcgCuCGa -3' miRNA: 3'- -GACGCG--CGCGCCUaGCCcGGGAa-G-GC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 34683 | 0.66 | 0.606319 |
Target: 5'- -aGCGCGCuGCGuGAcggUGGGCCCcUCg- -3' miRNA: 3'- gaCGCGCG-CGC-CUa--GCCCGGGaAGgc -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 74481 | 0.66 | 0.606319 |
Target: 5'- -gGCGUGCcuggGCGGGaucUCGGcGCUCUUCgGg -3' miRNA: 3'- gaCGCGCG----CGCCU---AGCC-CGGGAAGgC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 118987 | 0.66 | 0.606319 |
Target: 5'- gCUGUGCuucuGCGuCGGGgccugcUGGGCCCgcgCCGa -3' miRNA: 3'- -GACGCG----CGC-GCCUa-----GCCCGGGaa-GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 21196 | 0.66 | 0.606319 |
Target: 5'- -aGCGCGgcCGCGGAcgCuGGCCCcggCCGc -3' miRNA: 3'- gaCGCGC--GCGCCUa-GcCCGGGaa-GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 133944 | 0.66 | 0.606319 |
Target: 5'- cCUGCGCcagGCGCGGcgCauguucGGCCUUUgCCGc -3' miRNA: 3'- -GACGCG---CGCGCCuaGc-----CCGGGAA-GGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 74349 | 0.66 | 0.596545 |
Target: 5'- -gGCGCgGCgGCGGAagGGGCggCCgcgUCCGc -3' miRNA: 3'- gaCGCG-CG-CGCCUagCCCG--GGa--AGGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 98273 | 0.66 | 0.596545 |
Target: 5'- -gGCGCGCGCGu-UCGacGCCCggcgcgUCCGc -3' miRNA: 3'- gaCGCGCGCGCcuAGCc-CGGGa-----AGGC- -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 58490 | 0.66 | 0.596545 |
Target: 5'- -gGCcgGCGCGCGGccgcuuUUGGcGCCCgcgUCCa -3' miRNA: 3'- gaCG--CGCGCGCCu-----AGCC-CGGGa--AGGc -5' |
|||||||
23807 | 5' | -62.6 | NC_005261.1 | + | 105299 | 0.66 | 0.596545 |
Target: 5'- -cGgGCGCGCGaGcgCgGGGUCCUcgcacUCCGc -3' miRNA: 3'- gaCgCGCGCGC-CuaG-CCCGGGA-----AGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home