miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23812 5' -55.6 NC_005261.1 + 95206 0.66 0.888841
Target:  5'- ----cGCGCCGCCCgcccgCGCGGugcguGUUCCa -3'
miRNA:   3'- aaauuUGUGGCGGG-----GCGUCu----CGAGGa -5'
23812 5' -55.6 NC_005261.1 + 33549 0.66 0.888841
Target:  5'- --gGGGCGCCaGCCCCGCcaa-CUCCg -3'
miRNA:   3'- aaaUUUGUGG-CGGGGCGucucGAGGa -5'
23812 5' -55.6 NC_005261.1 + 119595 0.66 0.888841
Target:  5'- ---cGugGCCGCCCCGUAugccGAGCcgCUg -3'
miRNA:   3'- aaauUugUGGCGGGGCGU----CUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 92161 0.66 0.888841
Target:  5'- --cGAGCGCgCGCUCgGUGGAGCcgCCg -3'
miRNA:   3'- aaaUUUGUG-GCGGGgCGUCUCGa-GGa -5'
23812 5' -55.6 NC_005261.1 + 115006 0.66 0.888841
Target:  5'- ---cGGCcCCgGCCCCGCGGAGg-CCUc -3'
miRNA:   3'- aaauUUGuGG-CGGGGCGUCUCgaGGA- -5'
23812 5' -55.6 NC_005261.1 + 67772 0.66 0.888841
Target:  5'- --gAGGCGCCGCCCC-CGGccgccccCUCCUc -3'
miRNA:   3'- aaaUUUGUGGCGGGGcGUCuc-----GAGGA- -5'
23812 5' -55.6 NC_005261.1 + 75306 0.66 0.888141
Target:  5'- ----cGCACCGCgCCaccgucggcggcgCGCGGAGC-CCUg -3'
miRNA:   3'- aaauuUGUGGCG-GG-------------GCGUCUCGaGGA- -5'
23812 5' -55.6 NC_005261.1 + 48242 0.66 0.881736
Target:  5'- -----cUACCGcCCCCGCAGcGCggggCCa -3'
miRNA:   3'- aaauuuGUGGC-GGGGCGUCuCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 9702 0.66 0.881736
Target:  5'- ----cGCuCCGCCCCcuccccuagcaGCAGcGCUCCg -3'
miRNA:   3'- aaauuUGuGGCGGGG-----------CGUCuCGAGGa -5'
23812 5' -55.6 NC_005261.1 + 53705 0.66 0.881736
Target:  5'- --cGGGCGCCGCgCgCCGCGGccAGCUgCg -3'
miRNA:   3'- aaaUUUGUGGCG-G-GGCGUC--UCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 76618 0.66 0.881736
Target:  5'- -----cCGCCGCCCCGCu--GC-CCa -3'
miRNA:   3'- aaauuuGUGGCGGGGCGucuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 129287 0.66 0.881736
Target:  5'- ----cGCGCCGCCCCGCcc-GCcCCc -3'
miRNA:   3'- aaauuUGUGGCGGGGCGucuCGaGGa -5'
23812 5' -55.6 NC_005261.1 + 87450 0.66 0.881736
Target:  5'- --gAAGCGCCGCCgCGCcu-GCUCg- -3'
miRNA:   3'- aaaUUUGUGGCGGgGCGucuCGAGga -5'
23812 5' -55.6 NC_005261.1 + 40253 0.66 0.881736
Target:  5'- -gUGAGCGCCauggcggcgGCCgCgGCGGGGCUCa- -3'
miRNA:   3'- aaAUUUGUGG---------CGG-GgCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 107669 0.66 0.881736
Target:  5'- -----cCGCgGCCCCGCcGGGCguugCCg -3'
miRNA:   3'- aaauuuGUGgCGGGGCGuCUCGa---GGa -5'
23812 5' -55.6 NC_005261.1 + 118320 0.66 0.879559
Target:  5'- ----cGCACCGCgcugcuggccaugaCCUGCGGGcuGCUCCUc -3'
miRNA:   3'- aaauuUGUGGCG--------------GGGCGUCU--CGAGGA- -5'
23812 5' -55.6 NC_005261.1 + 36957 0.66 0.874397
Target:  5'- --aAGGC-CCGCCgcgcggCGCAGAGCUCg- -3'
miRNA:   3'- aaaUUUGuGGCGGg-----GCGUCUCGAGga -5'
23812 5' -55.6 NC_005261.1 + 85989 0.66 0.874397
Target:  5'- --cGAGCugCGCCgCCGaCGGGGCgucgugcgCCa -3'
miRNA:   3'- aaaUUUGugGCGG-GGC-GUCUCGa-------GGa -5'
23812 5' -55.6 NC_005261.1 + 55030 0.66 0.874397
Target:  5'- -gUAGcCGCCgGCCCCGCGcAGCUgCg -3'
miRNA:   3'- aaAUUuGUGG-CGGGGCGUcUCGAgGa -5'
23812 5' -55.6 NC_005261.1 + 82992 0.66 0.874397
Target:  5'- --gAGGCgGCCGCCUCGCGcaccGAGCcgCCg -3'
miRNA:   3'- aaaUUUG-UGGCGGGGCGU----CUCGa-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.