miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 59232 0.66 0.719672
Target:  5'- gCCGCcgGGCCacgaGCGAGAGCgggCGCcggcgCCACGc -3'
miRNA:   3'- gGGUG--UCGG----CGCUCUCG---GCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 100063 0.66 0.719672
Target:  5'- gCCGCcGCCGCccGGGGgCGCgCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGc-UCUCgGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 121642 0.66 0.719672
Target:  5'- gCCGCcGCCgGCGAGcgcgGGCUG-UCCGCGu -3'
miRNA:   3'- gGGUGuCGG-CGCUC----UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 21411 0.66 0.719672
Target:  5'- uCCCGC-GCCGCGccGGCCGgugcaguucUUCCGCc -3'
miRNA:   3'- -GGGUGuCGGCGCucUCGGC---------GAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 51711 0.66 0.719672
Target:  5'- uUCCAcCAGCUGCgGGGGGUCGUgCgCACGc -3'
miRNA:   3'- -GGGU-GUCGGCG-CUCUCGGCGaG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 109040 0.66 0.719672
Target:  5'- gCgCGCAGCCGCGc-GGCCGCcagguagCCcaGCGg -3'
miRNA:   3'- -GgGUGUCGGCGCucUCGGCGa------GG--UGC- -5'
23813 3' -60.9 NC_005261.1 + 51273 0.66 0.719672
Target:  5'- uCCCACAagaucGCCGUccuGGCCGCggCCACc -3'
miRNA:   3'- -GGGUGU-----CGGCGcucUCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 22808 0.66 0.719672
Target:  5'- gCCgGCGGCgGCGcu-GCCGCcgCCGCc -3'
miRNA:   3'- -GGgUGUCGgCGCucuCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 77844 0.66 0.719672
Target:  5'- cCCCuc-GCCGCcacAGCCgGCUCCACa -3'
miRNA:   3'- -GGGuguCGGCGcucUCGG-CGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 131065 0.66 0.719672
Target:  5'- aCCUGCAGgCCGUGcGGGaCUGCcuggCCACGu -3'
miRNA:   3'- -GGGUGUC-GGCGCuCUC-GGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 23209 0.66 0.719672
Target:  5'- gCCCGCAGCgGCG---GCCGCg-CGCa -3'
miRNA:   3'- -GGGUGUCGgCGCucuCGGCGagGUGc -5'
23813 3' -60.9 NC_005261.1 + 107416 0.66 0.719672
Target:  5'- gCCAgGGCCGaGAGcuucguccgguAGCCG-UCCACGu -3'
miRNA:   3'- gGGUgUCGGCgCUC-----------UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 73445 0.66 0.719672
Target:  5'- aCCAggcCGGCCGCGu---CCGCgUCCGCGc -3'
miRNA:   3'- gGGU---GUCGGCGCucucGGCG-AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 28287 0.66 0.713906
Target:  5'- gCCGCGGCCGCGGucGUcuccuucguucgcggCGC-CCGCGc -3'
miRNA:   3'- gGGUGUCGGCGCUcuCG---------------GCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 58484 0.66 0.71005
Target:  5'- gCCGCAgGCCgGCGcGcGGCCGCUUUugGc -3'
miRNA:   3'- gGGUGU-CGG-CGCuC-UCGGCGAGGugC- -5'
23813 3' -60.9 NC_005261.1 + 55143 0.66 0.71005
Target:  5'- gCCGCAagaugugcGCgCGCGAGcGCCGCcgCCGgCGg -3'
miRNA:   3'- gGGUGU--------CG-GCGCUCuCGGCGa-GGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 35091 0.66 0.71005
Target:  5'- cCUCGgAGCCGCGGuGAGCgGCgagccccccagCCGCc -3'
miRNA:   3'- -GGGUgUCGGCGCU-CUCGgCGa----------GGUGc -5'
23813 3' -60.9 NC_005261.1 + 28235 0.66 0.71005
Target:  5'- cCCCcCGGCgcgcgcgauaGCGGGGGCUGCUCgGgGg -3'
miRNA:   3'- -GGGuGUCGg---------CGCUCUCGGCGAGgUgC- -5'
23813 3' -60.9 NC_005261.1 + 19037 0.66 0.71005
Target:  5'- --gGCAGCCG-GAGAGCCGC-CagGCa -3'
miRNA:   3'- gggUGUCGGCgCUCUCGGCGaGg-UGc -5'
23813 3' -60.9 NC_005261.1 + 73758 0.66 0.71005
Target:  5'- gCCACGGCCGCuucuacGAGgCGCUggcCUGCGa -3'
miRNA:   3'- gGGUGUCGGCGcu----CUCgGCGA---GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.