Results 1 - 20 of 381 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23813 | 3' | -60.9 | NC_005261.1 | + | 23209 | 0.66 | 0.719672 |
Target: 5'- gCCCGCAGCgGCG---GCCGCg-CGCa -3' miRNA: 3'- -GGGUGUCGgCGCucuCGGCGagGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 51711 | 0.66 | 0.719672 |
Target: 5'- uUCCAcCAGCUGCgGGGGGUCGUgCgCACGc -3' miRNA: 3'- -GGGU-GUCGGCG-CUCUCGGCGaG-GUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 22808 | 0.66 | 0.719672 |
Target: 5'- gCCgGCGGCgGCGcu-GCCGCcgCCGCc -3' miRNA: 3'- -GGgUGUCGgCGCucuCGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 100063 | 0.66 | 0.719672 |
Target: 5'- gCCGCcGCCGCccGGGGgCGCgCCGCGc -3' miRNA: 3'- gGGUGuCGGCGc-UCUCgGCGaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 131065 | 0.66 | 0.719672 |
Target: 5'- aCCUGCAGgCCGUGcGGGaCUGCcuggCCACGu -3' miRNA: 3'- -GGGUGUC-GGCGCuCUC-GGCGa---GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 21411 | 0.66 | 0.719672 |
Target: 5'- uCCCGC-GCCGCGccGGCCGgugcaguucUUCCGCc -3' miRNA: 3'- -GGGUGuCGGCGCucUCGGC---------GAGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 109040 | 0.66 | 0.719672 |
Target: 5'- gCgCGCAGCCGCGc-GGCCGCcagguagCCcaGCGg -3' miRNA: 3'- -GgGUGUCGGCGCucUCGGCGa------GG--UGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 51273 | 0.66 | 0.719672 |
Target: 5'- uCCCACAagaucGCCGUccuGGCCGCggCCACc -3' miRNA: 3'- -GGGUGU-----CGGCGcucUCGGCGa-GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 73445 | 0.66 | 0.719672 |
Target: 5'- aCCAggcCGGCCGCGu---CCGCgUCCGCGc -3' miRNA: 3'- gGGU---GUCGGCGCucucGGCG-AGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 59232 | 0.66 | 0.719672 |
Target: 5'- gCCGCcgGGCCacgaGCGAGAGCgggCGCcggcgCCACGc -3' miRNA: 3'- gGGUG--UCGG----CGCUCUCG---GCGa----GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 121642 | 0.66 | 0.719672 |
Target: 5'- gCCGCcGCCgGCGAGcgcgGGCUG-UCCGCGu -3' miRNA: 3'- gGGUGuCGG-CGCUC----UCGGCgAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 77844 | 0.66 | 0.719672 |
Target: 5'- cCCCuc-GCCGCcacAGCCgGCUCCACa -3' miRNA: 3'- -GGGuguCGGCGcucUCGG-CGAGGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 107416 | 0.66 | 0.719672 |
Target: 5'- gCCAgGGCCGaGAGcuucguccgguAGCCG-UCCACGu -3' miRNA: 3'- gGGUgUCGGCgCUC-----------UCGGCgAGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 28287 | 0.66 | 0.713906 |
Target: 5'- gCCGCGGCCGCGGucGUcuccuucguucgcggCGC-CCGCGc -3' miRNA: 3'- gGGUGUCGGCGCUcuCG---------------GCGaGGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 73758 | 0.66 | 0.71005 |
Target: 5'- gCCACGGCCGCuucuacGAGgCGCUggcCUGCGa -3' miRNA: 3'- gGGUGUCGGCGcu----CUCgGCGA---GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 19037 | 0.66 | 0.71005 |
Target: 5'- --gGCAGCCG-GAGAGCCGC-CagGCa -3' miRNA: 3'- gggUGUCGGCgCUCUCGGCGaGg-UGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 35091 | 0.66 | 0.71005 |
Target: 5'- cCUCGgAGCCGCGGuGAGCgGCgagccccccagCCGCc -3' miRNA: 3'- -GGGUgUCGGCGCU-CUCGgCGa----------GGUGc -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 61254 | 0.66 | 0.71005 |
Target: 5'- aCUCGCuGGCCGCcuccGGGGCCGUgcCCAUGc -3' miRNA: 3'- -GGGUG-UCGGCGc---UCUCGGCGa-GGUGC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 55143 | 0.66 | 0.71005 |
Target: 5'- gCCGCAagaugugcGCgCGCGAGcGCCGCcgCCGgCGg -3' miRNA: 3'- gGGUGU--------CG-GCGCUCuCGGCGa-GGU-GC- -5' |
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23813 | 3' | -60.9 | NC_005261.1 | + | 28235 | 0.66 | 0.71005 |
Target: 5'- cCCCcCGGCgcgcgcgauaGCGGGGGCUGCUCgGgGg -3' miRNA: 3'- -GGGuGUCGg---------CGCUCUCGGCGAGgUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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