Results 1 - 20 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 61219 | 0.66 | 0.853922 |
Target: 5'- gGuuGCGAuCGCgCUCGGcguucgGCGCgaGCUCGACu -3' miRNA: 3'- -CggCGCU-GCG-GGGCU------UGCG--UGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 30563 | 0.66 | 0.853922 |
Target: 5'- cGCCGcCGGgGCCUCGGACGgGgaCGGg -3' miRNA: 3'- -CGGC-GCUgCGGGGCUUGCgUgaGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 88789 | 0.66 | 0.853922 |
Target: 5'- gGCCGcCGGCGCCgCGcagcagGACGC-CggCGGCg -3' miRNA: 3'- -CGGC-GCUGCGGgGC------UUGCGuGa-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 125327 | 0.66 | 0.853922 |
Target: 5'- gGCCuCGGCGUCCgcAGCGCGCagGGCg -3' miRNA: 3'- -CGGcGCUGCGGGgcUUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 125705 | 0.66 | 0.853922 |
Target: 5'- gGCCcgGCGACgGCCgCC--GCGgGCUCGGCu -3' miRNA: 3'- -CGG--CGCUG-CGG-GGcuUGCgUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 53368 | 0.66 | 0.853922 |
Target: 5'- gGCCGC--CGCCCCGGcCGCGgugUCAAa -3' miRNA: 3'- -CGGCGcuGCGGGGCUuGCGUg--AGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 71381 | 0.66 | 0.853922 |
Target: 5'- aGCCGCGcCGCgaCCCGGuACGCGugguaggCGGCg -3' miRNA: 3'- -CGGCGCuGCG--GGGCU-UGCGUga-----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 105287 | 0.66 | 0.853922 |
Target: 5'- cGCCgGCGA-G-CCCGGGCGCGCg-AGCg -3' miRNA: 3'- -CGG-CGCUgCgGGGCUUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 35690 | 0.66 | 0.853922 |
Target: 5'- cGCCgGCGA-GCCCCGGugGgCcggggGCUCggUg -3' miRNA: 3'- -CGG-CGCUgCGGGGCUugC-G-----UGAGuuG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 82806 | 0.66 | 0.853922 |
Target: 5'- cGCCGCGGCcaccuGCagCCGGugcCGCGCUCccGCg -3' miRNA: 3'- -CGGCGCUG-----CGg-GGCUu--GCGUGAGu-UG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 113893 | 0.66 | 0.853922 |
Target: 5'- aGCgGCGACGCggCGGGCGCGauggccgaggCAGCg -3' miRNA: 3'- -CGgCGCUGCGggGCUUGCGUga--------GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 31177 | 0.66 | 0.853922 |
Target: 5'- cGCCGCGGCGCUggcggccuacugCCGccccgaggucgcGGCGCgGCUCGc- -3' miRNA: 3'- -CGGCGCUGCGG------------GGC------------UUGCG-UGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 28312 | 0.66 | 0.853922 |
Target: 5'- uUCGCGGCGCCC---GCGCuCUCGc- -3' miRNA: 3'- cGGCGCUGCGGGgcuUGCGuGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 68544 | 0.66 | 0.853922 |
Target: 5'- cCCGCG-CGCCCCcugcuGCGCggGCUCu-- -3' miRNA: 3'- cGGCGCuGCGGGGcu---UGCG--UGAGuug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 13656 | 0.66 | 0.851594 |
Target: 5'- cGCCGUGcCGCCgCCGcggggggggcgcggGGCGCGCg-GGCg -3' miRNA: 3'- -CGGCGCuGCGG-GGC--------------UUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 14881 | 0.66 | 0.846093 |
Target: 5'- aUCGCGGCGCa--GAGCGCGagcagCAGCa -3' miRNA: 3'- cGGCGCUGCGgggCUUGCGUga---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 48449 | 0.66 | 0.846093 |
Target: 5'- -gCGUGGCGCggCCG-GCGCGgUCAACg -3' miRNA: 3'- cgGCGCUGCGg-GGCuUGCGUgAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 33617 | 0.66 | 0.846093 |
Target: 5'- gGCgGCGGgGCCCgGGgGCGCGCcCcGCa -3' miRNA: 3'- -CGgCGCUgCGGGgCU-UGCGUGaGuUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 12734 | 0.66 | 0.846093 |
Target: 5'- cCCGcCGGCcCCCUGGGCGgGCcCGGCg -3' miRNA: 3'- cGGC-GCUGcGGGGCUUGCgUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 37635 | 0.66 | 0.846093 |
Target: 5'- cGCCuaGCGGCGCCCCcaa-GCcCUUGGCc -3' miRNA: 3'- -CGG--CGCUGCGGGGcuugCGuGAGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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