miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 82806 0.66 0.853922
Target:  5'- cGCCGCGGCcaccuGCagCCGGugcCGCGCUCccGCg -3'
miRNA:   3'- -CGGCGCUG-----CGg-GGCUu--GCGUGAGu-UG- -5'
23814 3' -57.7 NC_005261.1 + 68544 0.66 0.853922
Target:  5'- cCCGCG-CGCCCCcugcuGCGCggGCUCu-- -3'
miRNA:   3'- cGGCGCuGCGGGGcu---UGCG--UGAGuug -5'
23814 3' -57.7 NC_005261.1 + 125705 0.66 0.853922
Target:  5'- gGCCcgGCGACgGCCgCC--GCGgGCUCGGCu -3'
miRNA:   3'- -CGG--CGCUG-CGG-GGcuUGCgUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 113893 0.66 0.853922
Target:  5'- aGCgGCGACGCggCGGGCGCGauggccgaggCAGCg -3'
miRNA:   3'- -CGgCGCUGCGggGCUUGCGUga--------GUUG- -5'
23814 3' -57.7 NC_005261.1 + 30563 0.66 0.853922
Target:  5'- cGCCGcCGGgGCCUCGGACGgGgaCGGg -3'
miRNA:   3'- -CGGC-GCUgCGGGGCUUGCgUgaGUUg -5'
23814 3' -57.7 NC_005261.1 + 61219 0.66 0.853922
Target:  5'- gGuuGCGAuCGCgCUCGGcguucgGCGCgaGCUCGACu -3'
miRNA:   3'- -CggCGCU-GCG-GGGCU------UGCG--UGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 53368 0.66 0.853922
Target:  5'- gGCCGC--CGCCCCGGcCGCGgugUCAAa -3'
miRNA:   3'- -CGGCGcuGCGGGGCUuGCGUg--AGUUg -5'
23814 3' -57.7 NC_005261.1 + 35690 0.66 0.853922
Target:  5'- cGCCgGCGA-GCCCCGGugGgCcggggGCUCggUg -3'
miRNA:   3'- -CGG-CGCUgCGGGGCUugC-G-----UGAGuuG- -5'
23814 3' -57.7 NC_005261.1 + 71381 0.66 0.853922
Target:  5'- aGCCGCGcCGCgaCCCGGuACGCGugguaggCGGCg -3'
miRNA:   3'- -CGGCGCuGCG--GGGCU-UGCGUga-----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 105287 0.66 0.853922
Target:  5'- cGCCgGCGA-G-CCCGGGCGCGCg-AGCg -3'
miRNA:   3'- -CGG-CGCUgCgGGGCUUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 88789 0.66 0.853922
Target:  5'- gGCCGcCGGCGCCgCGcagcagGACGC-CggCGGCg -3'
miRNA:   3'- -CGGC-GCUGCGGgGC------UUGCGuGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 125327 0.66 0.853922
Target:  5'- gGCCuCGGCGUCCgcAGCGCGCagGGCg -3'
miRNA:   3'- -CGGcGCUGCGGGgcUUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 31177 0.66 0.853922
Target:  5'- cGCCGCGGCGCUggcggccuacugCCGccccgaggucgcGGCGCgGCUCGc- -3'
miRNA:   3'- -CGGCGCUGCGG------------GGC------------UUGCG-UGAGUug -5'
23814 3' -57.7 NC_005261.1 + 28312 0.66 0.853922
Target:  5'- uUCGCGGCGCCC---GCGCuCUCGc- -3'
miRNA:   3'- cGGCGCUGCGGGgcuUGCGuGAGUug -5'
23814 3' -57.7 NC_005261.1 + 13656 0.66 0.851594
Target:  5'- cGCCGUGcCGCCgCCGcggggggggcgcggGGCGCGCg-GGCg -3'
miRNA:   3'- -CGGCGCuGCGG-GGC--------------UUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 48449 0.66 0.846093
Target:  5'- -gCGUGGCGCggCCG-GCGCGgUCAACg -3'
miRNA:   3'- cgGCGCUGCGg-GGCuUGCGUgAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 33617 0.66 0.846093
Target:  5'- gGCgGCGGgGCCCgGGgGCGCGCcCcGCa -3'
miRNA:   3'- -CGgCGCUgCGGGgCU-UGCGUGaGuUG- -5'
23814 3' -57.7 NC_005261.1 + 31872 0.66 0.846093
Target:  5'- gGCC-CGGCGCCuUCGcGCGCGC-CGAg -3'
miRNA:   3'- -CGGcGCUGCGG-GGCuUGCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 12734 0.66 0.846093
Target:  5'- cCCGcCGGCcCCCUGGGCGgGCcCGGCg -3'
miRNA:   3'- cGGC-GCUGcGGGGCUUGCgUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 14881 0.66 0.846093
Target:  5'- aUCGCGGCGCa--GAGCGCGagcagCAGCa -3'
miRNA:   3'- cGGCGCUGCGgggCUUGCGUga---GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.