miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23815 5' -54.5 NC_005261.1 + 2996 0.66 0.961965
Target:  5'- gCCugGCGGcCCGGCgccggggCUCccgCGGG-CCu -3'
miRNA:   3'- -GGugCGUCuGGCUGa------GAGa--GCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 1601 0.66 0.961965
Target:  5'- gCGCGguGGCUGGCcgcCUCgcccuccgCGaAGUCCg -3'
miRNA:   3'- gGUGCguCUGGCUGa--GAGa-------GC-UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 103418 0.66 0.961619
Target:  5'- uCCGCGCGGGCCGcggccacgcgcgcGCgcgC-CUCGcGGUCg -3'
miRNA:   3'- -GGUGCGUCUGGC-------------UGa--GaGAGC-UCAGg -5'
23815 5' -54.5 NC_005261.1 + 80881 0.66 0.958408
Target:  5'- gCCGCGCGGGCuucagCGGCgcCUCccagGGGUCCu -3'
miRNA:   3'- -GGUGCGUCUG-----GCUGa-GAGag--CUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 75068 0.66 0.957298
Target:  5'- aCCGCGCGcGCCGGCgggggCUCggcgggcaucgucuUCGGGaCCu -3'
miRNA:   3'- -GGUGCGUcUGGCUGa----GAG--------------AGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 51379 0.66 0.950625
Target:  5'- aCGCGCAGGCCGuGCgcgaaCUCcgCGAGcggagCCc -3'
miRNA:   3'- gGUGCGUCUGGC-UGa----GAGa-GCUCa----GG- -5'
23815 5' -54.5 NC_005261.1 + 57367 0.66 0.948113
Target:  5'- cCCGCGCGGcCCGACgcccgccagcagCUCGGGgagcgcgCCc -3'
miRNA:   3'- -GGUGCGUCuGGCUGaga---------GAGCUCa------GG- -5'
23815 5' -54.5 NC_005261.1 + 39231 0.66 0.946392
Target:  5'- cUCGCGCGcGCCGGCgaggUCUCcggCGAGgucUCCa -3'
miRNA:   3'- -GGUGCGUcUGGCUG----AGAGa--GCUC---AGG- -5'
23815 5' -54.5 NC_005261.1 + 51001 0.66 0.946392
Target:  5'- gCGCGUGGGCgCGGCgggagCUCggCGAGcgCCa -3'
miRNA:   3'- gGUGCGUCUG-GCUGa----GAGa-GCUCa-GG- -5'
23815 5' -54.5 NC_005261.1 + 84372 0.66 0.946392
Target:  5'- gCC-CGCGGGCuCGGC-CUCggccgccgccUCGAGcUCCa -3'
miRNA:   3'- -GGuGCGUCUG-GCUGaGAG----------AGCUC-AGG- -5'
23815 5' -54.5 NC_005261.1 + 121264 0.66 0.945956
Target:  5'- uCCGcCGCAGAcggggcggccgccCCGGCcucgCUCUCGuccccGUCCc -3'
miRNA:   3'- -GGU-GCGUCU-------------GGCUGa---GAGAGCu----CAGG- -5'
23815 5' -54.5 NC_005261.1 + 72937 0.67 0.939605
Target:  5'- gUCGCGCAGcgccggcgccggcACCGGCUCgcgcccgccgccgCggGGGUCCg -3'
miRNA:   3'- -GGUGCGUC-------------UGGCUGAGa------------GagCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 64515 0.67 0.937226
Target:  5'- gCC-CGCGGG-CGGCUC-CUCGucggggggcaGGUCCg -3'
miRNA:   3'- -GGuGCGUCUgGCUGAGaGAGC----------UCAGG- -5'
23815 5' -54.5 NC_005261.1 + 119959 0.67 0.93229
Target:  5'- aCCGCGCAcccGCCGuCUCcgUCGAGcCCc -3'
miRNA:   3'- -GGUGCGUc--UGGCuGAGagAGCUCaGG- -5'
23815 5' -54.5 NC_005261.1 + 15290 0.67 0.93229
Target:  5'- gCGCGCGGuCgCGGC-CUC-CGGGUCg -3'
miRNA:   3'- gGUGCGUCuG-GCUGaGAGaGCUCAGg -5'
23815 5' -54.5 NC_005261.1 + 80570 0.67 0.927116
Target:  5'- uCCGCG-AGACaGGCUC-CUUGAGgcgCCg -3'
miRNA:   3'- -GGUGCgUCUGgCUGAGaGAGCUCa--GG- -5'
23815 5' -54.5 NC_005261.1 + 55042 0.67 0.927116
Target:  5'- cCCGCGCAGcugcgcgggGCCGGCgagCUCGGccgCCg -3'
miRNA:   3'- -GGUGCGUC---------UGGCUGagaGAGCUca-GG- -5'
23815 5' -54.5 NC_005261.1 + 37107 0.67 0.927116
Target:  5'- uCCGCGCGG-CUGuACUCUCUgCGcG-CCg -3'
miRNA:   3'- -GGUGCGUCuGGC-UGAGAGA-GCuCaGG- -5'
23815 5' -54.5 NC_005261.1 + 129368 0.67 0.927116
Target:  5'- gCGCGCGGgucGCgCGGCU---UCGGGUCCa -3'
miRNA:   3'- gGUGCGUC---UG-GCUGAgagAGCUCAGG- -5'
23815 5' -54.5 NC_005261.1 + 67069 0.67 0.921705
Target:  5'- gCGCGCGGG--GGCUCgCUCGggcGGUCCa -3'
miRNA:   3'- gGUGCGUCUggCUGAGaGAGC---UCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.