miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23818 5' -52.6 NC_005261.1 + 59356 0.65 0.980193
Target:  5'- cGUcGCcACGAGggugucgcccgCCAGCGCCCgcgccACGg -3'
miRNA:   3'- -CGuUGaUGCUCaa---------GGUCGCGGGa----UGC- -5'
23818 5' -52.6 NC_005261.1 + 104969 0.66 0.978595
Target:  5'- cGCAACaGCGuccucccccgccCCGGCGCCCaGCGc -3'
miRNA:   3'- -CGUUGaUGCucaa--------GGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 37930 0.66 0.978359
Target:  5'- cGCGAgUACGAGcgCCGgagccGCGUCgaGCGg -3'
miRNA:   3'- -CGUUgAUGCUCaaGGU-----CGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 110677 0.66 0.978359
Target:  5'- cGCAGCgccuggagcACGAGggcuUCC-GCGCCC-ACGu -3'
miRNA:   3'- -CGUUGa--------UGCUCa---AGGuCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 116519 0.66 0.978359
Target:  5'- cGCGGCggcGCGAGgcccgCCGcuccGCGCCCgcgcGCGu -3'
miRNA:   3'- -CGUUGa--UGCUCaa---GGU----CGCGGGa---UGC- -5'
23818 5' -52.6 NC_005261.1 + 334 0.66 0.978359
Target:  5'- gGCGGCUGCGGcggCCcGCaGCCCggcGCGg -3'
miRNA:   3'- -CGUUGAUGCUcaaGGuCG-CGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 138005 0.66 0.978359
Target:  5'- gGCGGCUGCGGcggCCcGCaGCCCggcGCGg -3'
miRNA:   3'- -CGUUGAUGCUcaaGGuCG-CGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 136487 0.66 0.978359
Target:  5'- gGCAGCaGCGAGcagCuCGGCGCCg-ACGc -3'
miRNA:   3'- -CGUUGaUGCUCaa-G-GUCGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 2221 0.66 0.978359
Target:  5'- aGCAGgUGCGAGagCCcgccGCGCaCCgGCGg -3'
miRNA:   3'- -CGUUgAUGCUCaaGGu---CGCG-GGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 133703 0.66 0.978359
Target:  5'- -gAGCUGCGcGaccCCGGCGCCguCUACGu -3'
miRNA:   3'- cgUUGAUGCuCaa-GGUCGCGG--GAUGC- -5'
23818 5' -52.6 NC_005261.1 + 116635 0.66 0.975894
Target:  5'- cCGACgaggGCGAGgcCCGcGCGCCCgcCGc -3'
miRNA:   3'- cGUUGa---UGCUCaaGGU-CGCGGGauGC- -5'
23818 5' -52.6 NC_005261.1 + 56050 0.66 0.975894
Target:  5'- cGCGA--GCGAuGUUCgggGGCGCCCUggGCGa -3'
miRNA:   3'- -CGUUgaUGCU-CAAGg--UCGCGGGA--UGC- -5'
23818 5' -52.6 NC_005261.1 + 134981 0.66 0.975894
Target:  5'- gGCGAggACGGGgccgCCggGGCGCCCcugGCGc -3'
miRNA:   3'- -CGUUgaUGCUCaa--GG--UCGCGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 29879 0.66 0.975894
Target:  5'- cGCcGCUGCcg---CCAGCGCCCgggcccGCGg -3'
miRNA:   3'- -CGuUGAUGcucaaGGUCGCGGGa-----UGC- -5'
23818 5' -52.6 NC_005261.1 + 11873 0.66 0.975894
Target:  5'- uCAGCUGCGGGgcgagcCCGcccgcacgcGCGCCCgccGCGg -3'
miRNA:   3'- cGUUGAUGCUCaa----GGU---------CGCGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 36814 0.66 0.975637
Target:  5'- gGC-GCUACGugccccgguaugcGGUgCCGGCGCCCggggGCu -3'
miRNA:   3'- -CGuUGAUGC-------------UCAaGGUCGCGGGa---UGc -5'
23818 5' -52.6 NC_005261.1 + 36916 0.66 0.97323
Target:  5'- cGC-GCUGggcCGGGacguacUCCGGgGCCCUGCGc -3'
miRNA:   3'- -CGuUGAU---GCUCa-----AGGUCgCGGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 97657 0.66 0.97323
Target:  5'- cGCAcCUG-GGGggCCGGCGUCC-GCGg -3'
miRNA:   3'- -CGUuGAUgCUCaaGGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 124076 0.66 0.97323
Target:  5'- cCGACUGC-AGc-CCGGCGCCC-GCGu -3'
miRNA:   3'- cGUUGAUGcUCaaGGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 76420 0.66 0.97323
Target:  5'- gGCGcgUGCaGAGcgCCGGCGCCaugGCGg -3'
miRNA:   3'- -CGUugAUG-CUCaaGGUCGCGGga-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.