miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 114328 0.66 0.965754
Target:  5'- cGGCGCaagGUGGACUGGCuCGagcgGCGCGu -3'
miRNA:   3'- aCCGUGa--CGUCUGGCUGuGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75573 0.66 0.965754
Target:  5'- gGGCGCUggGCGGcgGCgCGGCGCucGCGCGc -3'
miRNA:   3'- aCCGUGA--CGUC--UG-GCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 51368 0.66 0.965754
Target:  5'- cGGCGCggaguacgcGCAGGCCGuGCGCGaacucCGCGa -3'
miRNA:   3'- aCCGUGa--------CGUCUGGC-UGUGUau---GUGC- -5'
23819 3' -53.3 NC_005261.1 + 19149 0.66 0.965754
Target:  5'- cGGCGCgcacgGCcaGCCGGCGgAUcACGCGa -3'
miRNA:   3'- aCCGUGa----CGucUGGCUGUgUA-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 82955 0.66 0.965754
Target:  5'- cGGCGCcggGCGGAagaCGugguGCGCGUcgaGCACGg -3'
miRNA:   3'- aCCGUGa--CGUCUg--GC----UGUGUA---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 60123 0.66 0.965754
Target:  5'- gGGCAC-GUAGGCCG-CGa--ACACGg -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 72933 0.66 0.965754
Target:  5'- gGGUgucGC-GCAGcGCCGGCGCcgGCACc -3'
miRNA:   3'- aCCG---UGaCGUC-UGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 100936 0.66 0.965754
Target:  5'- aGcCGCUGCAGGCC--CGCGUcCACGg -3'
miRNA:   3'- aCcGUGACGUCUGGcuGUGUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 51782 0.66 0.965754
Target:  5'- cGGCGucgccCUGCuGGCCGugGcCAUGCuCGu -3'
miRNA:   3'- aCCGU-----GACGuCUGGCugU-GUAUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 32236 0.66 0.965754
Target:  5'- gUGGCcuuCUGCGcGGCCG-CGC-UGCugGa -3'
miRNA:   3'- -ACCGu--GACGU-CUGGCuGUGuAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 29788 0.66 0.965754
Target:  5'- aUGGC-CUacccGgAGGCCGGCGCcggcgGCGCGg -3'
miRNA:   3'- -ACCGuGA----CgUCUGGCUGUGua---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 1712 0.66 0.962334
Target:  5'- cGGUACUcgcgcgGCGGcACgGGCACcgcgGUGCGCGg -3'
miRNA:   3'- aCCGUGA------CGUC-UGgCUGUG----UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 57538 0.66 0.962334
Target:  5'- nGGCGCgGCGcACgGGCACAcgucGCACGc -3'
miRNA:   3'- aCCGUGaCGUcUGgCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 52980 0.66 0.962334
Target:  5'- cGGCGCcgGCAGGCgGGgGCG-GCGCc -3'
miRNA:   3'- aCCGUGa-CGUCUGgCUgUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 88658 0.66 0.962334
Target:  5'- gUGGCGgUGCAcguguacggcGugCGGCACuacuuuUACAUGg -3'
miRNA:   3'- -ACCGUgACGU----------CugGCUGUGu-----AUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 68873 0.66 0.962334
Target:  5'- cGGCugUGC--GCCGucguGCGC-UGCGCGg -3'
miRNA:   3'- aCCGugACGucUGGC----UGUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 77915 0.66 0.962334
Target:  5'- aGGUgagccaGCUGCGGGCCGGCuACcccUACGg -3'
miRNA:   3'- aCCG------UGACGUCUGGCUG-UGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 14975 0.66 0.962334
Target:  5'- gGGCgACUGCGcGGCCG-CGCcgGcCGCGc -3'
miRNA:   3'- aCCG-UGACGU-CUGGCuGUGuaU-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 134770 0.66 0.958685
Target:  5'- cGGCAUgGCGGACC-ACGagaGCGCGa -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 135278 0.66 0.958685
Target:  5'- nGGcCugUGCAGAaCGGCGgGUuccGCGCGa -3'
miRNA:   3'- aCC-GugACGUCUgGCUGUgUA---UGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.