miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 19548 0.66 0.912307
Target:  5'- cCGCCAgCGCCGUGgggaGcGCCAGcgGGCg -3'
miRNA:   3'- -GUGGUaGUGGCACaug-C-CGGUC--UCGg -5'
23820 3' -55.9 NC_005261.1 + 62651 0.66 0.912307
Target:  5'- aCGCCGUUgACCGagaaggaGGCCAGcGCCa -3'
miRNA:   3'- -GUGGUAG-UGGCacaug--CCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 122258 0.66 0.912307
Target:  5'- gGCCAgCGCCGcc-GCcGUCAGGGCCg -3'
miRNA:   3'- gUGGUaGUGGCacaUGcCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 40678 0.66 0.912307
Target:  5'- aCGCCGUCggggaGCCGgcgcCGGCCGG-GCUc -3'
miRNA:   3'- -GUGGUAG-----UGGCacauGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 55816 0.66 0.912307
Target:  5'- cCGCCGUaaaGgCGUGUAUaaaGGCCGG-GUCg -3'
miRNA:   3'- -GUGGUAg--UgGCACAUG---CCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 65523 0.66 0.912307
Target:  5'- -uCCAUCACCcaGcGCGGCCGcgcGGGCa -3'
miRNA:   3'- guGGUAGUGGcaCaUGCCGGU---CUCGg -5'
23820 3' -55.9 NC_005261.1 + 83016 0.66 0.912307
Target:  5'- cCGCCGUCGCCG---GCGcCCccgggAGGGCCg -3'
miRNA:   3'- -GUGGUAGUGGCacaUGCcGG-----UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 63545 0.66 0.911709
Target:  5'- uGCCcgcgCGCCGUGcccgcuggcGCGGCCGGcaugaugGGCCc -3'
miRNA:   3'- gUGGua--GUGGCACa--------UGCCGGUC-------UCGG- -5'
23820 3' -55.9 NC_005261.1 + 103793 0.66 0.910508
Target:  5'- gGCCGUCuuCgGUGUGCGccguugcgcccgccGCCAGcAGCUc -3'
miRNA:   3'- gUGGUAGu-GgCACAUGC--------------CGGUC-UCGG- -5'
23820 3' -55.9 NC_005261.1 + 30977 0.66 0.906847
Target:  5'- gGCC--CGCCGcGgcgcaagcgcaaguCGGCCGGGGCCa -3'
miRNA:   3'- gUGGuaGUGGCaCau------------GCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 119058 0.66 0.906228
Target:  5'- cCGCgGcCGCgCGUGUGCuuucguGGCCcGGGCCa -3'
miRNA:   3'- -GUGgUaGUG-GCACAUG------CCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 70706 0.66 0.906228
Target:  5'- gGCCcgCGCgG-GcACGGCCgAGAGCa -3'
miRNA:   3'- gUGGuaGUGgCaCaUGCCGG-UCUCGg -5'
23820 3' -55.9 NC_005261.1 + 118980 0.66 0.906228
Target:  5'- aCGCCG-CGCUGUGcuucUGC-GUCGGGGCCu -3'
miRNA:   3'- -GUGGUaGUGGCAC----AUGcCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 51803 0.66 0.906228
Target:  5'- gGCCAUgcUCGUGcUGCGGCUGGuGCg -3'
miRNA:   3'- gUGGUAguGGCAC-AUGCCGGUCuCGg -5'
23820 3' -55.9 NC_005261.1 + 97301 0.66 0.906228
Target:  5'- uCGgCAUCuucuCCGUccGCggGGCCGGGGCCc -3'
miRNA:   3'- -GUgGUAGu---GGCAcaUG--CCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 2933 0.66 0.906228
Target:  5'- gCACCucCACCGcc-GCGGCCGGgcuccGGCCc -3'
miRNA:   3'- -GUGGuaGUGGCacaUGCCGGUC-----UCGG- -5'
23820 3' -55.9 NC_005261.1 + 23346 0.66 0.906228
Target:  5'- gGCgCAgcgCGCgCGUGU-CGGCCGugacaaacgccGAGCCg -3'
miRNA:   3'- gUG-GUa--GUG-GCACAuGCCGGU-----------CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 70470 0.66 0.906228
Target:  5'- aGCCcgCGCCGcggGUGCGcgcGCguGAGCa -3'
miRNA:   3'- gUGGuaGUGGCa--CAUGC---CGguCUCGg -5'
23820 3' -55.9 NC_005261.1 + 3337 0.66 0.902467
Target:  5'- cCACCcgCGCCGcGgcgcccggcgcgcCGGCCuucAGGGCCg -3'
miRNA:   3'- -GUGGuaGUGGCaCau-----------GCCGG---UCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 75461 0.66 0.899913
Target:  5'- gGCCAguuccaggCGCCGggcgGCGGCgCGG-GCCg -3'
miRNA:   3'- gUGGUa-------GUGGCaca-UGCCG-GUCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.