miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 3' -66.7 NC_005261.1 + 54240 0.66 0.426726
Target:  5'- -cGGCGcgcgcucaugugcaGCGcGCCCuGGCGCCgCGCa -3'
miRNA:   3'- gaCCGCa-------------CGCuCGGG-CCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 104279 0.66 0.423391
Target:  5'- -cGGCGgcugcGCGGGCCUcGCaGgCCCGCg -3'
miRNA:   3'- gaCCGCa----CGCUCGGGcCG-CgGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 1413 0.66 0.423391
Target:  5'- -cGGCGgcgGCGGGggCGGCGC-CCGCc -3'
miRNA:   3'- gaCCGCa--CGCUCggGCCGCGgGGCGa -5'
23821 3' -66.7 NC_005261.1 + 51915 0.66 0.423391
Target:  5'- -gGGCGcgcaGCG-GCCgCGGCcugGUCCCGCUc -3'
miRNA:   3'- gaCCGCa---CGCuCGG-GCCG---CGGGGCGA- -5'
23821 3' -66.7 NC_005261.1 + 111610 0.66 0.423391
Target:  5'- -gGGCGcgGCuGGGCUgCGGCGCCgugCCGCc -3'
miRNA:   3'- gaCCGCa-CG-CUCGG-GCCGCGG---GGCGa -5'
23821 3' -66.7 NC_005261.1 + 37191 0.66 0.423391
Target:  5'- gCUGGCG-GCGcuGCUggCGGCGCuacuguggcuCCCGCg -3'
miRNA:   3'- -GACCGCaCGCu-CGG--GCCGCG----------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 17197 0.66 0.423391
Target:  5'- -cGGCG-GCGAGCagcGCGCCCaGCa -3'
miRNA:   3'- gaCCGCaCGCUCGggcCGCGGGgCGa -5'
23821 3' -66.7 NC_005261.1 + 53982 0.66 0.418418
Target:  5'- -aGcGCG-GCGAGCuCCagcgcgcggcgcacaGGCGCCgCCGCg -3'
miRNA:   3'- gaC-CGCaCGCUCG-GG---------------CCGCGG-GGCGa -5'
23821 3' -66.7 NC_005261.1 + 4181 0.66 0.415123
Target:  5'- -gGGCccGCGAGCUUcGCGCUCUGCa -3'
miRNA:   3'- gaCCGcaCGCUCGGGcCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 55202 0.66 0.415123
Target:  5'- -cGGCGUaGCGcGGaUCCGGCGgCCCGa- -3'
miRNA:   3'- gaCCGCA-CGC-UC-GGGCCGCgGGGCga -5'
23821 3' -66.7 NC_005261.1 + 93413 0.66 0.415123
Target:  5'- -cGuCGUGC--GCCC-GCGCCCCGCg -3'
miRNA:   3'- gaCcGCACGcuCGGGcCGCGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 67116 0.66 0.415123
Target:  5'- -cGGCGcGCGcAGUgCGGCGgCCCGa- -3'
miRNA:   3'- gaCCGCaCGC-UCGgGCCGCgGGGCga -5'
23821 3' -66.7 NC_005261.1 + 31438 0.66 0.415123
Target:  5'- gCUGGCG-GCGccGCCCGGCGaggacgagcgCCgGCg -3'
miRNA:   3'- -GACCGCaCGCu-CGGGCCGCg---------GGgCGa -5'
23821 3' -66.7 NC_005261.1 + 115113 0.66 0.415123
Target:  5'- -cGGCG-GCGcuGCCCacGGCGCCCaCGa- -3'
miRNA:   3'- gaCCGCaCGCu-CGGG--CCGCGGG-GCga -5'
23821 3' -66.7 NC_005261.1 + 129741 0.66 0.415123
Target:  5'- -gGGCG-GCgGGGCCCGGCcuucaGCaCCgGCg -3'
miRNA:   3'- gaCCGCaCG-CUCGGGCCG-----CG-GGgCGa -5'
23821 3' -66.7 NC_005261.1 + 106776 0.66 0.415123
Target:  5'- -cGGCG-GCcAGCCCaGCGCcgucugcgCCCGCa -3'
miRNA:   3'- gaCCGCaCGcUCGGGcCGCG--------GGGCGa -5'
23821 3' -66.7 NC_005261.1 + 36841 0.66 0.414301
Target:  5'- -cGGCGcccggggGCuAGCCCGcGCuccgcccGCCCCGCa -3'
miRNA:   3'- gaCCGCa------CGcUCGGGC-CG-------CGGGGCGa -5'
23821 3' -66.7 NC_005261.1 + 15369 0.66 0.406954
Target:  5'- -cGGCG-GC--GCUCGGCGCCCUcgGCg -3'
miRNA:   3'- gaCCGCaCGcuCGGGCCGCGGGG--CGa -5'
23821 3' -66.7 NC_005261.1 + 62557 0.66 0.406954
Target:  5'- -aGGCGccgccagcaUGCGc-CCCGGCGCCaCGCg -3'
miRNA:   3'- gaCCGC---------ACGCucGGGCCGCGGgGCGa -5'
23821 3' -66.7 NC_005261.1 + 86979 0.66 0.406954
Target:  5'- -cGGCG-GC-AGCaCGGCGCCCuCGUg -3'
miRNA:   3'- gaCCGCaCGcUCGgGCCGCGGG-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.