miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 5' -55.3 NC_005261.1 + 16187 0.66 0.910664
Target:  5'- -uGGCGGGGg--UGGGCGGgGGcCGCGu -3'
miRNA:   3'- acUCGCUCCacaACUCGUCgUC-GUGC- -5'
23821 5' -55.3 NC_005261.1 + 72917 0.66 0.910664
Target:  5'- uUGAGCGccgcaaacaGGGUGUcGcGCAGCgccGGCGCc -3'
miRNA:   3'- -ACUCGC---------UCCACAaCuCGUCG---UCGUGc -5'
23821 5' -55.3 NC_005261.1 + 138203 0.66 0.910664
Target:  5'- cGGGCGGGGggcaGGGCGGaCGGCGg- -3'
miRNA:   3'- aCUCGCUCCacaaCUCGUC-GUCGUgc -5'
23821 5' -55.3 NC_005261.1 + 532 0.66 0.910664
Target:  5'- cGGGCGGGGggcaGGGCGGaCGGCGg- -3'
miRNA:   3'- aCUCGCUCCacaaCUCGUC-GUCGUgc -5'
23821 5' -55.3 NC_005261.1 + 96711 0.66 0.904403
Target:  5'- aGcAGCGAGuUGgcGGGCAccacccgggcGCGGCGCGa -3'
miRNA:   3'- aC-UCGCUCcACaaCUCGU----------CGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 34921 0.66 0.904403
Target:  5'- gGGGCGcGGccacgcGggGGGCGGCcGGCGCGa -3'
miRNA:   3'- aCUCGCuCCa-----CaaCUCGUCG-UCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 97439 0.66 0.897898
Target:  5'- uUGGGCGcGG-GUcUGGGCuucGGCGGCGCc -3'
miRNA:   3'- -ACUCGCuCCaCA-ACUCG---UCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 1294 0.66 0.897898
Target:  5'- -cGGCGGGGcucccGUcGccGGCGGCGGCACGc -3'
miRNA:   3'- acUCGCUCCa----CAaC--UCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 23259 0.66 0.897898
Target:  5'- cGGGCGAGagcu---GCAGCAGCGCc -3'
miRNA:   3'- aCUCGCUCcacaacuCGUCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 14959 0.66 0.89115
Target:  5'- cGAGCGGGcGUGccugGGGCGaCuGCGCGg -3'
miRNA:   3'- aCUCGCUC-CACaa--CUCGUcGuCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 18122 0.66 0.89115
Target:  5'- cGAGCGGGGg---GaAGCAGCcGCAgGc -3'
miRNA:   3'- aCUCGCUCCacaaC-UCGUCGuCGUgC- -5'
23821 5' -55.3 NC_005261.1 + 64436 0.66 0.89115
Target:  5'- --cGCGc-GcGUUGuGCAGCAGCACGu -3'
miRNA:   3'- acuCGCucCaCAACuCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 11432 0.66 0.884874
Target:  5'- cGGGCGGGGg---GGGCGGCGGaagagggaaaaagaaGCGg -3'
miRNA:   3'- aCUCGCUCCacaaCUCGUCGUCg--------------UGC- -5'
23821 5' -55.3 NC_005261.1 + 5386 0.66 0.884165
Target:  5'- gGAGgGAGGgagGgaGAGCGagAGCGCGg -3'
miRNA:   3'- aCUCgCUCCa--CaaCUCGUcgUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 376 0.66 0.876947
Target:  5'- -uGGCGGcGGUGgc-GGCGGCGGCGgCGg -3'
miRNA:   3'- acUCGCU-CCACaacUCGUCGUCGU-GC- -5'
23821 5' -55.3 NC_005261.1 + 14321 0.66 0.876947
Target:  5'- gGAGCGAcGGc----GGCAGCAGCAgCGg -3'
miRNA:   3'- aCUCGCU-CCacaacUCGUCGUCGU-GC- -5'
23821 5' -55.3 NC_005261.1 + 138047 0.66 0.876947
Target:  5'- -uGGCGGcGGUGgc-GGCGGCGGCGgCGg -3'
miRNA:   3'- acUCGCU-CCACaacUCGUCGUCGU-GC- -5'
23821 5' -55.3 NC_005261.1 + 123179 0.67 0.867222
Target:  5'- cGGGCGuGGUGgcuggugUGGGCGGaCccagccgccgcguaAGCGCGg -3'
miRNA:   3'- aCUCGCuCCACa------ACUCGUC-G--------------UCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 65532 0.67 0.86183
Target:  5'- -cAGCGcGGccgcgcGGGCAGCAGCGCGu -3'
miRNA:   3'- acUCGCuCCacaa--CUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 108910 0.67 0.86183
Target:  5'- cGAGCGGGGcgcgggGUcgGGGCc-CAGCACGc -3'
miRNA:   3'- aCUCGCUCCa-----CAa-CUCGucGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.