miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 3' -56.1 NC_005261.1 + 35446 0.66 0.899288
Target:  5'- cCCGcCCCGCGGGUcuaggcgcGgcgcgcgcgcgucccGGGGUcCCUGCCGc -3'
miRNA:   3'- -GGC-GGGCGCCUA--------U---------------UUCUAcGGACGGU- -5'
23823 3' -56.1 NC_005261.1 + 128237 0.66 0.896681
Target:  5'- cCCGCCCGCGcucAUGAgccggaagcAGA-GCCUGUa- -3'
miRNA:   3'- -GGCGGGCGCc--UAUU---------UCUaCGGACGgu -5'
23823 3' -56.1 NC_005261.1 + 93488 0.66 0.896681
Target:  5'- gUCGCCCGCGGcgAAGcgcgcgaaccgcGgcGCCguguugGCCGc -3'
miRNA:   3'- -GGCGGGCGCCuaUUU------------CuaCGGa-----CGGU- -5'
23823 3' -56.1 NC_005261.1 + 32097 0.66 0.896681
Target:  5'- gCCGgacUUCGCGGAgggcGAGGcgGCCaGCCAc -3'
miRNA:   3'- -GGC---GGGCGCCUa---UUUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 4944 0.66 0.896681
Target:  5'- cCCGCgCCGCGGccc-AGgcGCCcccgGCCGc -3'
miRNA:   3'- -GGCG-GGCGCCuauuUCuaCGGa---CGGU- -5'
23823 3' -56.1 NC_005261.1 + 20346 0.66 0.896681
Target:  5'- aCGCCCGCGGcu---GccGCgaGCCGu -3'
miRNA:   3'- gGCGGGCGCCuauuuCuaCGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 93937 0.66 0.896681
Target:  5'- gCCGUCCGCGGGcGccgccuccGGGcgGUCgGCCGu -3'
miRNA:   3'- -GGCGGGCGCCUaU--------UUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 31043 0.66 0.896681
Target:  5'- gCCGCCggguccccagCGCGGcgGGAGccGCCgcUGCCc -3'
miRNA:   3'- -GGCGG----------GCGCCuaUUUCuaCGG--ACGGu -5'
23823 3' -56.1 NC_005261.1 + 99463 0.66 0.896681
Target:  5'- gCCGaCCCGCGGcgGcgcuGGccGCUgcgGCCAg -3'
miRNA:   3'- -GGC-GGGCGCCuaUu---UCuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 93611 0.66 0.890003
Target:  5'- gUCGCCC-CGGGUcgcGAcGCCgGCCAg -3'
miRNA:   3'- -GGCGGGcGCCUAuuuCUaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 30891 0.66 0.890003
Target:  5'- gCCGCCCGagcuCGGGcUGGGGccGCCcgGCCc -3'
miRNA:   3'- -GGCGGGC----GCCU-AUUUCuaCGGa-CGGu -5'
23823 3' -56.1 NC_005261.1 + 84892 0.66 0.890003
Target:  5'- -gGCUgGCGGc-GAAGGUGCCcGCCc -3'
miRNA:   3'- ggCGGgCGCCuaUUUCUACGGaCGGu -5'
23823 3' -56.1 NC_005261.1 + 101290 0.66 0.890003
Target:  5'- -gGCCCGCGGucgucGAUGCgC-GCCGu -3'
miRNA:   3'- ggCGGGCGCCuauuuCUACG-GaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 123056 0.66 0.890003
Target:  5'- uCUGCCCGCcgcucGAUGAggccccgagaGGcgGCCgGCCAc -3'
miRNA:   3'- -GGCGGGCGc----CUAUU----------UCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 30317 0.66 0.890003
Target:  5'- cCCGCCgGCGGA---AG-UGCCgGCgCGg -3'
miRNA:   3'- -GGCGGgCGCCUauuUCuACGGaCG-GU- -5'
23823 3' -56.1 NC_005261.1 + 81344 0.66 0.890003
Target:  5'- gCCGUCgGCGGGgc-GGggGCUUGCgGg -3'
miRNA:   3'- -GGCGGgCGCCUauuUCuaCGGACGgU- -5'
23823 3' -56.1 NC_005261.1 + 122372 0.66 0.889322
Target:  5'- gCGCggccccaCCGCGGccUGGGGgcGCUUGCCAa -3'
miRNA:   3'- gGCG-------GGCGCCu-AUUUCuaCGGACGGU- -5'
23823 3' -56.1 NC_005261.1 + 135242 0.66 0.889322
Target:  5'- gCCGCCgucuuugcgggcgCGCGGAUGGAcaucauGcgGCCUGUg- -3'
miRNA:   3'- -GGCGG-------------GCGCCUAUUU------CuaCGGACGgu -5'
23823 3' -56.1 NC_005261.1 + 68487 0.66 0.885885
Target:  5'- gCGCCCaaccgggagugcuucGCGcuGAUGcAGGcGUGCCUGCCGg -3'
miRNA:   3'- gGCGGG---------------CGC--CUAU-UUC-UACGGACGGU- -5'
23823 3' -56.1 NC_005261.1 + 53555 0.66 0.883796
Target:  5'- gCCGCgCCGCGGcccaggcgcacuAGcgGCCgcggGCCGg -3'
miRNA:   3'- -GGCG-GGCGCCuauu--------UCuaCGGa---CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.