miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23825 3' -64.1 NC_005261.1 + 55578 0.66 0.572999
Target:  5'- cCCCCGCaguccgcggcgGCGuCGCCCaugcgCuCCUCCUGGu -3'
miRNA:   3'- -GGGGUG-----------CGC-GCGGGgaa--G-GGAGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 96732 0.66 0.572999
Target:  5'- aCCCGgGCGCGgCgCgagUCCCggCCUGGg -3'
miRNA:   3'- gGGGUgCGCGCgGgGa--AGGGa-GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 77517 0.66 0.572999
Target:  5'- uCgCCGC-CGCGCCCCcg-CC-CCCGAu -3'
miRNA:   3'- -GgGGUGcGCGCGGGGaagGGaGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 105080 0.66 0.572999
Target:  5'- gUCCGCcgacucCGCGCCCCggaCCUUCCgCGGg -3'
miRNA:   3'- gGGGUGc-----GCGCGGGGaa-GGGAGG-GCU- -5'
23825 3' -64.1 NC_005261.1 + 6848 0.66 0.572999
Target:  5'- aCCCACcCcCGCCCCaUUCaCgCUCCCGu -3'
miRNA:   3'- gGGGUGcGcGCGGGG-AAG-G-GAGGGCu -5'
23825 3' -64.1 NC_005261.1 + 100072 0.66 0.572999
Target:  5'- gCCCGgggGCGCGCCgCgcCCCUCgCCGc -3'
miRNA:   3'- gGGGUg--CGCGCGGgGaaGGGAG-GGCu -5'
23825 3' -64.1 NC_005261.1 + 37909 0.66 0.572999
Target:  5'- gCCCUACGCGCGCCaCCg--CUgCgCGAg -3'
miRNA:   3'- -GGGGUGCGCGCGG-GGaagGGaGgGCU- -5'
23825 3' -64.1 NC_005261.1 + 39432 0.66 0.572045
Target:  5'- cCCCgGCGCGUccgcaggGCCCCgagCCUCCgCGc -3'
miRNA:   3'- -GGGgUGCGCG-------CGGGGaagGGAGG-GCu -5'
23825 3' -64.1 NC_005261.1 + 69365 0.66 0.570141
Target:  5'- gCCgCGCGCGCGCUggaCCUcgagaugaccgccgUCcugagccuggCCUCCCGAc -3'
miRNA:   3'- -GGgGUGCGCGCGG---GGA--------------AG----------GGAGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 88568 0.66 0.570141
Target:  5'- gCCgGCGaCGCGUCCCgcuucgccgccgaggCCCggCCCGGc -3'
miRNA:   3'- gGGgUGC-GCGCGGGGaa-------------GGGa-GGGCU- -5'
23825 3' -64.1 NC_005261.1 + 15125 0.66 0.563486
Target:  5'- aUCCgGCGuCGCGaCUCCUUCgCC-CCCGc -3'
miRNA:   3'- -GGGgUGC-GCGC-GGGGAAG-GGaGGGCu -5'
23825 3' -64.1 NC_005261.1 + 78136 0.66 0.563486
Target:  5'- aCCCC-CGC-CGCCCCggcgCCCg-CCGc -3'
miRNA:   3'- -GGGGuGCGcGCGGGGaa--GGGagGGCu -5'
23825 3' -64.1 NC_005261.1 + 22245 0.66 0.563486
Target:  5'- gCCCCGCcccucCGCGCCCgCUccgcuucuuuuUCCCUCuuCCGc -3'
miRNA:   3'- -GGGGUGc----GCGCGGG-GA-----------AGGGAG--GGCu -5'
23825 3' -64.1 NC_005261.1 + 119855 0.66 0.563486
Target:  5'- gCCCCugacCGUGCGCuCCCUgaccgCCgCagCCGAg -3'
miRNA:   3'- -GGGGu---GCGCGCG-GGGAa----GG-GagGGCU- -5'
23825 3' -64.1 NC_005261.1 + 117205 0.66 0.563486
Target:  5'- cUCCUACcgGCGCGCCCgCUgCCUgggCgCCGAg -3'
miRNA:   3'- -GGGGUG--CGCGCGGG-GAaGGGa--G-GGCU- -5'
23825 3' -64.1 NC_005261.1 + 104609 0.66 0.563486
Target:  5'- -gCCGCGCGUacgcguccaGCCCCUcgagCaCCaUCCCGGa -3'
miRNA:   3'- ggGGUGCGCG---------CGGGGAa---G-GG-AGGGCU- -5'
23825 3' -64.1 NC_005261.1 + 32662 0.66 0.563486
Target:  5'- cCCCCGCGC-CGCuaacgccgccgCCCgccgCCCUCCg-- -3'
miRNA:   3'- -GGGGUGCGcGCG-----------GGGaa--GGGAGGgcu -5'
23825 3' -64.1 NC_005261.1 + 32704 0.66 0.554015
Target:  5'- gCCCACcCGC-CCCCcgCCC-CCCGc -3'
miRNA:   3'- gGGGUGcGCGcGGGGaaGGGaGGGCu -5'
23825 3' -64.1 NC_005261.1 + 127118 0.66 0.554015
Target:  5'- aCCCgcgauuuuuauGCGCGCGCCCg--CCCgCCCc- -3'
miRNA:   3'- gGGG-----------UGCGCGCGGGgaaGGGaGGGcu -5'
23825 3' -64.1 NC_005261.1 + 82371 0.66 0.554015
Target:  5'- gCgCGCGCGCGCCgCCagcgccgCCCagCCCGc -3'
miRNA:   3'- gGgGUGCGCGCGG-GGaa-----GGGa-GGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.