miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 5' -61.4 NC_005261.1 + 87396 0.66 0.688004
Target:  5'- -gGCCGUCGUCucgacggcgCCgUCgacgggcgcgCCGGCGAAGGc -3'
miRNA:   3'- gaCGGCGGCAG---------GGgAG----------GGCCGUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 75556 0.66 0.688004
Target:  5'- cCUGCCgGCCaUCCCCggggcgCUgGGCGgcGGc -3'
miRNA:   3'- -GACGG-CGGcAGGGGa-----GGgCCGUuuCC- -5'
23832 5' -61.4 NC_005261.1 + 27993 0.66 0.688004
Target:  5'- uCUcCCGCCGgCCUCUCCgcgaaagggggcCGGCGggGAGGa -3'
miRNA:   3'- -GAcGGCGGCaGGGGAGG------------GCCGU--UUCC- -5'
23832 5' -61.4 NC_005261.1 + 124754 0.66 0.688004
Target:  5'- -aGCCGCagcggCCgCCUCCaGGCuGAGGa -3'
miRNA:   3'- gaCGGCGgca--GG-GGAGGgCCGuUUCC- -5'
23832 5' -61.4 NC_005261.1 + 91381 0.66 0.685078
Target:  5'- -gGaCCGCa-UCCCCUacgugaucgucgcgCCCGGCGAGGa -3'
miRNA:   3'- gaC-GGCGgcAGGGGA--------------GGGCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 117748 0.66 0.684102
Target:  5'- -cGCCGCCGcCCCCaacgcgacucgggUCCGGaucGGGg -3'
miRNA:   3'- gaCGGCGGCaGGGGa------------GGGCCguuUCC- -5'
23832 5' -61.4 NC_005261.1 + 91495 0.66 0.682149
Target:  5'- -gGCCGCCGcccgCCCCgcgcgCCUgcuggucucggacauGGCcGAGGa -3'
miRNA:   3'- gaCGGCGGCa---GGGGa----GGG---------------CCGuUUCC- -5'
23832 5' -61.4 NC_005261.1 + 29282 0.66 0.678237
Target:  5'- -cGCUGCUGaCgCCCUCC-GGCGAGGc -3'
miRNA:   3'- gaCGGCGGCaG-GGGAGGgCCGUUUCc -5'
23832 5' -61.4 NC_005261.1 + 57333 0.66 0.678237
Target:  5'- gCUGCCaGCCGgcgCCgUUCaCCGGCAc--- -3'
miRNA:   3'- -GACGG-CGGCa--GGgGAG-GGCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 109772 0.66 0.678237
Target:  5'- -cGUCGCCGUCUCgggcgUCCCGGCc---- -3'
miRNA:   3'- gaCGGCGGCAGGGg----AGGGCCGuuucc -5'
23832 5' -61.4 NC_005261.1 + 82428 0.66 0.678237
Target:  5'- --cCCGCCGUCCgCgccCCCGGCc--GGc -3'
miRNA:   3'- gacGGCGGCAGGgGa--GGGCCGuuuCC- -5'
23832 5' -61.4 NC_005261.1 + 124366 0.66 0.678237
Target:  5'- gCUG-CGCCGUCUaCUgCUCGGCAcAGGc -3'
miRNA:   3'- -GACgGCGGCAGGgGA-GGGCCGUuUCC- -5'
23832 5' -61.4 NC_005261.1 + 118531 0.66 0.678237
Target:  5'- cCUGCCccGCCGaCCCCUgCgGcGCGcgcGAGGa -3'
miRNA:   3'- -GACGG--CGGCaGGGGAgGgC-CGU---UUCC- -5'
23832 5' -61.4 NC_005261.1 + 55032 0.66 0.678237
Target:  5'- -aGCCGCCGgCCCCgcgCagcugcgcggggCCGGCGAGc- -3'
miRNA:   3'- gaCGGCGGCaGGGGa--G------------GGCCGUUUcc -5'
23832 5' -61.4 NC_005261.1 + 59596 0.66 0.668435
Target:  5'- -cGCCGCCa-CCaCCUCCgCGGCGcGGcGg -3'
miRNA:   3'- gaCGGCGGcaGG-GGAGG-GCCGUuUC-C- -5'
23832 5' -61.4 NC_005261.1 + 92930 0.66 0.668435
Target:  5'- gUGCCGgCGgagcagcugCCCggcgUCCCGGaCAAAGGc -3'
miRNA:   3'- gACGGCgGCa--------GGGg---AGGGCC-GUUUCC- -5'
23832 5' -61.4 NC_005261.1 + 24586 0.66 0.668435
Target:  5'- cCUGCaC-CCGcCCCCagUCCCGGCGGc-- -3'
miRNA:   3'- -GACG-GcGGCaGGGG--AGGGCCGUUucc -5'
23832 5' -61.4 NC_005261.1 + 10537 0.66 0.668435
Target:  5'- -cGCuCGCUGUCgCC-CCCGGCGc--- -3'
miRNA:   3'- gaCG-GCGGCAGgGGaGGGCCGUuucc -5'
23832 5' -61.4 NC_005261.1 + 34940 0.66 0.668435
Target:  5'- -gGCgGCCGgcgcgaCCCgggCCCGGCGGccuGGa -3'
miRNA:   3'- gaCGgCGGCag----GGGa--GGGCCGUUu--CC- -5'
23832 5' -61.4 NC_005261.1 + 108323 0.66 0.668435
Target:  5'- -gGCCGCCGcgugCUCCgcgaCCCGcGCcAGGGc -3'
miRNA:   3'- gaCGGCGGCa---GGGGa---GGGC-CGuUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.