miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23833 5' -57.6 NC_005261.1 + 97806 0.65 0.870572
Target:  5'- aCCGUC-CGccggcgcccccgcaGACGGCGgcaaaaacgGGGGCGGCGg -3'
miRNA:   3'- aGGUAGaGC--------------CUGCCGC---------UCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 67079 0.66 0.865456
Target:  5'- gCUcgCUCGGGCGGUccauGGcGCGACGc -3'
miRNA:   3'- aGGuaGAGCCUGCCGcu--CC-UGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 68073 0.66 0.865456
Target:  5'- gUgGUCUCGGuCGcccGCGGGGGCGGgGa -3'
miRNA:   3'- aGgUAGAGCCuGC---CGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 92466 0.66 0.863234
Target:  5'- gUCGUC-CGGAUGaGCGGcaccgcgagcucgcGGACGGCGg -3'
miRNA:   3'- aGGUAGaGCCUGC-CGCU--------------CCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 93667 0.66 0.857977
Target:  5'- aCCgGUCcgCGGGCGGCGgcgccggcGGGGCGcCGg -3'
miRNA:   3'- aGG-UAGa-GCCUGCCGC--------UCCUGCuGCa -5'
23833 5' -57.6 NC_005261.1 + 1108 0.66 0.8503
Target:  5'- gUCCGaggacgCGGACGaCGAGGAgGACGc -3'
miRNA:   3'- -AGGUaga---GCCUGCcGCUCCUgCUGCa -5'
23833 5' -57.6 NC_005261.1 + 74916 0.66 0.8503
Target:  5'- gCCGcgCgggGGAgGGCGAGGACGGgGa -3'
miRNA:   3'- aGGUa-Gag-CCUgCCGCUCCUGCUgCa -5'
23833 5' -57.6 NC_005261.1 + 63 0.66 0.8503
Target:  5'- gCCGaaaUCGGcGCGcGCGGGGGCGGgGUg -3'
miRNA:   3'- aGGUag-AGCC-UGC-CGCUCCUGCUgCA- -5'
23833 5' -57.6 NC_005261.1 + 22738 0.66 0.8503
Target:  5'- gCCAg-UCGGGC-GCG-GGGCGGCGg -3'
miRNA:   3'- aGGUagAGCCUGcCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 137746 0.66 0.8503
Target:  5'- gCCGaaaUCGGcGCGcGCGGGGGCGGgGUg -3'
miRNA:   3'- aGGUag-AGCC-UGC-CGCUCCUGCUgCA- -5'
23833 5' -57.6 NC_005261.1 + 87400 0.66 0.842432
Target:  5'- gUCGUCUC-GACGGCGccGuCGACGg -3'
miRNA:   3'- aGGUAGAGcCUGCCGCucCuGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 90369 0.66 0.842432
Target:  5'- aCCAcgCUCGuGcGCGGCGAGGccccgcCGGCGg -3'
miRNA:   3'- aGGUa-GAGC-C-UGCCGCUCCu-----GCUGCa -5'
23833 5' -57.6 NC_005261.1 + 12421 0.66 0.842432
Target:  5'- cUCCAg---GGGCGGCgGAGGgcuuGCGGCGUc -3'
miRNA:   3'- -AGGUagagCCUGCCG-CUCC----UGCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 35274 0.66 0.842432
Target:  5'- gUgGUgaCGGGCGGUGAGGGagGACGa -3'
miRNA:   3'- aGgUAgaGCCUGCCGCUCCUg-CUGCa -5'
23833 5' -57.6 NC_005261.1 + 50983 0.66 0.842432
Target:  5'- aCC-UCUCGGccgacgGCGGCGcguGGGcGCGGCGg -3'
miRNA:   3'- aGGuAGAGCC------UGCCGC---UCC-UGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 33596 0.66 0.842432
Target:  5'- aCCAggggCGGcgcCGGCGcGGGCGGCGg -3'
miRNA:   3'- aGGUaga-GCCu--GCCGCuCCUGCUGCa -5'
23833 5' -57.6 NC_005261.1 + 33796 0.66 0.842432
Target:  5'- cCCcgCgCGGGCGGCGGgcuugucuuuGGGCGGCc- -3'
miRNA:   3'- aGGuaGaGCCUGCCGCU----------CCUGCUGca -5'
23833 5' -57.6 NC_005261.1 + 95142 0.66 0.842432
Target:  5'- gUCCGcCUgcuggucgcCGGgaaccugcaguGCGGCGAGGGgGACGUg -3'
miRNA:   3'- -AGGUaGA---------GCC-----------UGCCGCUCCUgCUGCA- -5'
23833 5' -57.6 NC_005261.1 + 60837 0.67 0.82615
Target:  5'- aUCAUCggCGG-CGGCGAGGuCGcGCGc -3'
miRNA:   3'- aGGUAGa-GCCuGCCGCUCCuGC-UGCa -5'
23833 5' -57.6 NC_005261.1 + 68682 0.67 0.82615
Target:  5'- gUCCGcCgcgUGGGggcCGGCGcGGACGACGg -3'
miRNA:   3'- -AGGUaGa--GCCU---GCCGCuCCUGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.