miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 5' -64.7 NC_005261.1 + 87993 0.66 0.491855
Target:  5'- cGCgCCggCUCCUCCCCCGgCGg--- -3'
miRNA:   3'- aCGgGGaaGGGGGGGGGGCgGCauau -5'
23834 5' -64.7 NC_005261.1 + 76972 0.66 0.491855
Target:  5'- aGCCUgUguggCCCCCUUCCGCCGg--- -3'
miRNA:   3'- aCGGGgAag--GGGGGGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 52036 0.66 0.491855
Target:  5'- gGCCaacgCCCgCCCCgCCCGCCGc--- -3'
miRNA:   3'- aCGGggaaGGG-GGGG-GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 37736 0.66 0.491855
Target:  5'- aGCCCCccgUCgCCCCCCgcgggCGCCGc--- -3'
miRNA:   3'- aCGGGGa--AGgGGGGGGg----GCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 10076 0.66 0.491855
Target:  5'- -cUCCCUUCCagccgCCCgaCCCCCGCCGc--- -3'
miRNA:   3'- acGGGGAAGG-----GGG--GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 7727 0.66 0.473676
Target:  5'- gGCCCCaccccucaucguUUCCCgCUCCaCCCugcgguccgGCCGUGUGa -3'
miRNA:   3'- aCGGGG------------AAGGG-GGGG-GGG---------CGGCAUAU- -5'
23834 5' -64.7 NC_005261.1 + 21335 0.66 0.473676
Target:  5'- aGCCCCUgcuggugaaggUCCCCgCCCCUgGCUu---- -3'
miRNA:   3'- aCGGGGA-----------AGGGG-GGGGGgCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 124887 0.66 0.473676
Target:  5'- gGCCCgggUUCCUggCCgCCCCCGCCGc--- -3'
miRNA:   3'- aCGGGg--AAGGG--GG-GGGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 127247 0.66 0.473676
Target:  5'- aGCCU--UCCCCCCCCUCcagcgcuacgGCCGg--- -3'
miRNA:   3'- aCGGGgaAGGGGGGGGGG----------CGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9707 0.66 0.473676
Target:  5'- cGCCCCcUCCCCUagcagcagcgCUCCGCCGc--- -3'
miRNA:   3'- aCGGGGaAGGGGGg---------GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 9000 0.66 0.464714
Target:  5'- aGCCCC-UCCCaCauaCCCUGCCGg--- -3'
miRNA:   3'- aCGGGGaAGGG-Ggg-GGGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 26535 0.66 0.464714
Target:  5'- -cCCCCcUCCCCCCuuCUCCGCCu---- -3'
miRNA:   3'- acGGGGaAGGGGGG--GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 37702 0.66 0.455841
Target:  5'- gGCgCCUUCgUCCCCCaagcccucggCCCGCCGg--- -3'
miRNA:   3'- aCGgGGAAG-GGGGGG----------GGGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 72659 0.66 0.455841
Target:  5'- cGCCUCgggCCCCCCCggcgucaucuCCCGCgCGa--- -3'
miRNA:   3'- aCGGGGaa-GGGGGGG----------GGGCG-GCauau -5'
23834 5' -64.7 NC_005261.1 + 36694 0.66 0.455841
Target:  5'- aGUCCCUcggCCCCCCgCgcugaCCGCCGg--- -3'
miRNA:   3'- aCGGGGAa--GGGGGG-Gg----GGCGGCauau -5'
23834 5' -64.7 NC_005261.1 + 22345 0.66 0.455841
Target:  5'- -cUCCCUccauucauUUCCCCCCCCCGUCu---- -3'
miRNA:   3'- acGGGGA--------AGGGGGGGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 127281 0.66 0.455841
Target:  5'- cGCCCg--CCgcgggggcagCCCUCCCCGCCGgcUGg -3'
miRNA:   3'- aCGGGgaaGG----------GGGGGGGGCGGCauAU- -5'
23834 5' -64.7 NC_005261.1 + 22225 0.66 0.44706
Target:  5'- aGCCUCgagccggcaCCCCCgCCCCGCCc---- -3'
miRNA:   3'- aCGGGGaa-------GGGGGgGGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 119735 0.66 0.44706
Target:  5'- -aCCCCUUCCCgCgCgCCCCGCCc---- -3'
miRNA:   3'- acGGGGAAGGGgG-G-GGGGCGGcauau -5'
23834 5' -64.7 NC_005261.1 + 3058 0.67 0.438374
Target:  5'- cGUCCCcgUCCCCgUCCCCGUCc---- -3'
miRNA:   3'- aCGGGGa-AGGGGgGGGGGCGGcauau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.