miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23836 3' -58.4 NC_005261.1 + 28434 0.66 0.812951
Target:  5'- cGCGCGcaccGCGGCCG-GCcauggcgucuCCCGGCGg -3'
miRNA:   3'- -UGUGCacuuUGCCGGCuCG----------GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 35682 0.66 0.812951
Target:  5'- cGCACccccgcCGG-CGAGCCCCGGUGg -3'
miRNA:   3'- -UGUGcacuuuGCCgGCUCGGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 116164 0.66 0.812951
Target:  5'- cGCGCG-GucGCGGCCGcGUCCCcgacgccgcugGGCGc -3'
miRNA:   3'- -UGUGCaCuuUGCCGGCuCGGGG-----------UCGC- -5'
23836 3' -58.4 NC_005261.1 + 16253 0.66 0.812951
Target:  5'- cCGCGccGggGCcgccggGGCCGGGCUUCGGCu -3'
miRNA:   3'- uGUGCa-CuuUG------CCGGCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 105950 0.66 0.812951
Target:  5'- aGCGCGccgucGAUGGCCucGGCgCCCAGCGc -3'
miRNA:   3'- -UGUGCacu--UUGCCGGc-UCG-GGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 118609 0.66 0.812951
Target:  5'- uCGCGcUGu--CGGCCGuuGCCCUGGCc -3'
miRNA:   3'- uGUGC-ACuuuGCCGGCu-CGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 49235 0.66 0.812951
Target:  5'- cGCGCGcagguCGGCCGccGCCgCGGCGg -3'
miRNA:   3'- -UGUGCacuuuGCCGGCu-CGGgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 115494 0.66 0.812951
Target:  5'- cCGCG-GcgGCGcGCCGcAGCCCCcGCa -3'
miRNA:   3'- uGUGCaCuuUGC-CGGC-UCGGGGuCGc -5'
23836 3' -58.4 NC_005261.1 + 88361 0.66 0.812087
Target:  5'- -gGCGUucacaucGGAACGGCCGAGCgcgcgCCCAagGUGu -3'
miRNA:   3'- ugUGCA-------CUUUGCCGGCUCG-----GGGU--CGC- -5'
23836 3' -58.4 NC_005261.1 + 103618 0.66 0.807745
Target:  5'- aGCGCGgGAGGCGGCggcggccaucgccuCGAagcgggccaugcuaGCCuCCAGCGa -3'
miRNA:   3'- -UGUGCaCUUUGCCG--------------GCU--------------CGG-GGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 105107 0.66 0.804244
Target:  5'- cCGCG-GggGCuugcccgcgcgGGCgCGGGCCgCCGGCGc -3'
miRNA:   3'- uGUGCaCuuUG-----------CCG-GCUCGG-GGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 88538 0.66 0.804244
Target:  5'- gACAuCGUgGAGACGaccgaguacCCGAGCgCCGGCGa -3'
miRNA:   3'- -UGU-GCA-CUUUGCc--------GGCUCGgGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 121268 0.66 0.804244
Target:  5'- cCGCagacGggGCGGCC--GCCCCGGCc -3'
miRNA:   3'- uGUGca--CuuUGCCGGcuCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 41104 0.66 0.804244
Target:  5'- cCGCGUcGuccGCGG-CGGGCCCgAGCGc -3'
miRNA:   3'- uGUGCA-Cuu-UGCCgGCUCGGGgUCGC- -5'
23836 3' -58.4 NC_005261.1 + 72154 0.66 0.804244
Target:  5'- uGCACGUccGGggUGuCCGGGaUCCCGGCGu -3'
miRNA:   3'- -UGUGCA--CUuuGCcGGCUC-GGGGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 95625 0.66 0.804244
Target:  5'- cGCGCGguccaGGAGCGGCUGGGCgagcgcgacgCgCGGCGc -3'
miRNA:   3'- -UGUGCa----CUUUGCCGGCUCG----------GgGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 48306 0.66 0.804244
Target:  5'- gGCcuCGgGggGCGcGUCGGGCCCgGGCu -3'
miRNA:   3'- -UGu-GCaCuuUGC-CGGCUCGGGgUCGc -5'
23836 3' -58.4 NC_005261.1 + 4534 0.66 0.804244
Target:  5'- cCGCGgcGAGgGcGCCGGGCCCUGGCc -3'
miRNA:   3'- uGUGCacUUUgC-CGGCUCGGGGUCGc -5'
23836 3' -58.4 NC_005261.1 + 119627 0.66 0.804244
Target:  5'- uGCACuGcGGcgUGGCCGAcaacGCCaCCGGCGg -3'
miRNA:   3'- -UGUG-CaCUuuGCCGGCU----CGG-GGUCGC- -5'
23836 3' -58.4 NC_005261.1 + 58992 0.66 0.795385
Target:  5'- cCACGgGcgGCGgugcGCCGGGCucgCCCAGCGg -3'
miRNA:   3'- uGUGCaCuuUGC----CGGCUCG---GGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.