miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 3' -59 NC_005261.1 + 98007 0.66 0.777245
Target:  5'- cGGCgggGGCGCUGGCggcGAGGCUG-GAg -3'
miRNA:   3'- -CCGgagCUGCGACCGa--CUCCGGUaCU- -5'
23838 3' -59 NC_005261.1 + 13345 0.66 0.777245
Target:  5'- cGGCCagcggUCGGCGgaGGCUG-GGCgGc-- -3'
miRNA:   3'- -CCGG-----AGCUGCgaCCGACuCCGgUacu -5'
23838 3' -59 NC_005261.1 + 97215 0.66 0.777245
Target:  5'- cGGCCacgcUCGgagGCGCUGGCgccGGCCcgGc -3'
miRNA:   3'- -CCGG----AGC---UGCGACCGacuCCGGuaCu -5'
23838 3' -59 NC_005261.1 + 97137 0.66 0.777245
Target:  5'- cGGCCacgcUCGgagGCGCUGGCgccGGCCcgGc -3'
miRNA:   3'- -CCGG----AGC---UGCGACCGacuCCGGuaCu -5'
23838 3' -59 NC_005261.1 + 88840 0.66 0.777245
Target:  5'- cGGCC-CGGCGUcGGCUaccuGGGCCGc-- -3'
miRNA:   3'- -CCGGaGCUGCGaCCGAc---UCCGGUacu -5'
23838 3' -59 NC_005261.1 + 90124 0.66 0.777245
Target:  5'- cGGCCcgCGGCGagGGCgaggaggGGGGCgAUGGg -3'
miRNA:   3'- -CCGGa-GCUGCgaCCGa------CUCCGgUACU- -5'
23838 3' -59 NC_005261.1 + 102457 0.66 0.777245
Target:  5'- cGGCCUCGGCGCgcaGGCgccGGaCCu--- -3'
miRNA:   3'- -CCGGAGCUGCGa--CCGacuCC-GGuacu -5'
23838 3' -59 NC_005261.1 + 121174 0.66 0.777245
Target:  5'- gGGCgCUCGGUGCacggGGCcGGGGCCGg-- -3'
miRNA:   3'- -CCG-GAGCUGCGa---CCGaCUCCGGUacu -5'
23838 3' -59 NC_005261.1 + 51239 0.66 0.767979
Target:  5'- cGCCUgGACGCUccaGGC---GGCCGUGc -3'
miRNA:   3'- cCGGAgCUGCGA---CCGacuCCGGUACu -5'
23838 3' -59 NC_005261.1 + 32545 0.66 0.767979
Target:  5'- cGGCCgCGGCGCgGGCcGGcGCgCGUGGa -3'
miRNA:   3'- -CCGGaGCUGCGaCCGaCUcCG-GUACU- -5'
23838 3' -59 NC_005261.1 + 33840 0.66 0.767979
Target:  5'- gGGCCcccUGGCGCUGGgc-GGGCCggGAg -3'
miRNA:   3'- -CCGGa--GCUGCGACCgacUCCGGuaCU- -5'
23838 3' -59 NC_005261.1 + 90098 0.66 0.767979
Target:  5'- gGGCC-CGuuCGCcGGCUG-GGCCGa-- -3'
miRNA:   3'- -CCGGaGCu-GCGaCCGACuCCGGUacu -5'
23838 3' -59 NC_005261.1 + 132763 0.66 0.766111
Target:  5'- cGCCUUGuccagcacgccgucAUGCUGGagcgccccuucgccGAGGCCAUGAg -3'
miRNA:   3'- cCGGAGC--------------UGCGACCga------------CUCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 47459 0.66 0.758595
Target:  5'- cGGCC-CGcuuGCGCgggGGCUG-GGCgAUGu -3'
miRNA:   3'- -CCGGaGC---UGCGa--CCGACuCCGgUACu -5'
23838 3' -59 NC_005261.1 + 50921 0.66 0.757651
Target:  5'- cGCCUCGccggGCGCggGGCUccccugcuucuacGcGGCCGUGGu -3'
miRNA:   3'- cCGGAGC----UGCGa-CCGA-------------CuCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 118658 0.66 0.749102
Target:  5'- gGGCCgCG-CGCUcggGGCUGAGGgCGgcgGGc -3'
miRNA:   3'- -CCGGaGCuGCGA---CCGACUCCgGUa--CU- -5'
23838 3' -59 NC_005261.1 + 97682 0.66 0.749102
Target:  5'- gGGCUUgGGCGg-GGCUGccgGGGCgGUGGg -3'
miRNA:   3'- -CCGGAgCUGCgaCCGAC---UCCGgUACU- -5'
23838 3' -59 NC_005261.1 + 109075 0.66 0.749102
Target:  5'- cGCCUCGGCgaucaugccGUUGGCcaggucccgGAcgccGGCCAUGAg -3'
miRNA:   3'- cCGGAGCUG---------CGACCGa--------CU----CCGGUACU- -5'
23838 3' -59 NC_005261.1 + 25277 0.66 0.749102
Target:  5'- cGCCgcgagggGGCGC-GGuCUGuGGCCGUGAg -3'
miRNA:   3'- cCGGag-----CUGCGaCC-GACuCCGGUACU- -5'
23838 3' -59 NC_005261.1 + 61558 0.66 0.745276
Target:  5'- cGCCgacgaucugauggUGGCGCUGGUgauGGCCGUGu -3'
miRNA:   3'- cCGGa------------GCUGCGACCGacuCCGGUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.