miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 3' -60.6 NC_005261.1 + 10426 0.66 0.712781
Target:  5'- gGUGCUGUGCCCaCGGacgcgugCUGggaGGCGc -3'
miRNA:   3'- gCACGACGCGGG-GCCg------GACaugCUGU- -5'
23841 3' -60.6 NC_005261.1 + 131797 0.66 0.712781
Target:  5'- --cGCcGCGCCcgCCGcGCCUG-ACGGCGc -3'
miRNA:   3'- gcaCGaCGCGG--GGC-CGGACaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 111921 0.66 0.712781
Target:  5'- uGUGC-GCG-CUCGGCCUGcaguCGGCGc -3'
miRNA:   3'- gCACGaCGCgGGGCCGGACau--GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 53712 0.66 0.703013
Target:  5'- --cGC-GCGCCgCGGCCaGcUGCGGCGc -3'
miRNA:   3'- gcaCGaCGCGGgGCCGGaC-AUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 88770 0.66 0.693189
Target:  5'- --cGCUGCGCuCCuCGGCcCUGgccgcCGGCGc -3'
miRNA:   3'- gcaCGACGCG-GG-GCCG-GACau---GCUGU- -5'
23841 3' -60.6 NC_005261.1 + 118815 0.66 0.693189
Target:  5'- gCGU-CUGCGCCCUGGgC---GCGGCAc -3'
miRNA:   3'- -GCAcGACGCGGGGCCgGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 130837 0.66 0.68727
Target:  5'- cCGUGCgcucaaccuugcgcGCGCgCCCGGCCgGgcgccGCGGCc -3'
miRNA:   3'- -GCACGa-------------CGCG-GGGCCGGaCa----UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 63380 0.66 0.683316
Target:  5'- uGUGCcggGuCGCCCUGGCCgugGU-CGaACAu -3'
miRNA:   3'- gCACGa--C-GCGGGGCCGGa--CAuGC-UGU- -5'
23841 3' -60.6 NC_005261.1 + 64057 0.66 0.673402
Target:  5'- gCGUGgUGCGCCaCCGGCUgccGcACGGu- -3'
miRNA:   3'- -GCACgACGCGG-GGCCGGa--CaUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 131740 0.66 0.673402
Target:  5'- gGUGCUGCacgcggacgGCaCgCCGGCCgGcGCGGCGg -3'
miRNA:   3'- gCACGACG---------CG-G-GGCCGGaCaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 98771 0.66 0.673402
Target:  5'- --cGCUGcCGCCgCCGGCCgccggccgcgcGUGCGAa- -3'
miRNA:   3'- gcaCGAC-GCGG-GGCCGGa----------CAUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 118609 0.66 0.663457
Target:  5'- uCGcGCUGUcggccguuGCCCUGGCCgccGCGGCGg -3'
miRNA:   3'- -GCaCGACG--------CGGGGCCGGacaUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 81061 0.66 0.653487
Target:  5'- aCGUGCUGCccGCCCaGGUCgugGUcACGAUc -3'
miRNA:   3'- -GCACGACG--CGGGgCCGGa--CA-UGCUGu -5'
23841 3' -60.6 NC_005261.1 + 77521 0.66 0.650493
Target:  5'- --cGCcGCGCCCCcgcccccgaugccgGGCUgGUACGGCGc -3'
miRNA:   3'- gcaCGaCGCGGGG--------------CCGGaCAUGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 2984 0.67 0.643501
Target:  5'- --gGCUGgGgCUCGGCCUG-GCGGCc -3'
miRNA:   3'- gcaCGACgCgGGGCCGGACaUGCUGu -5'
23841 3' -60.6 NC_005261.1 + 52226 0.67 0.643501
Target:  5'- --cGCgGCGCUgCGGCCgGUACGGu- -3'
miRNA:   3'- gcaCGaCGCGGgGCCGGaCAUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 108408 0.67 0.643501
Target:  5'- --aGCcGCGCCaCCGcGCCUGcgugcACGGCAa -3'
miRNA:   3'- gcaCGaCGCGG-GGC-CGGACa----UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 46272 0.67 0.633507
Target:  5'- cCGUGUccccgggGCGCUCUGGCCgGgcaACGGCGc -3'
miRNA:   3'- -GCACGa------CGCGGGGCCGGaCa--UGCUGU- -5'
23841 3' -60.6 NC_005261.1 + 1277 0.67 0.633507
Target:  5'- uGUGCcgGCGCCCaGGCCg--GCGGg- -3'
miRNA:   3'- gCACGa-CGCGGGgCCGGacaUGCUgu -5'
23841 3' -60.6 NC_005261.1 + 3821 0.67 0.633507
Target:  5'- gCGcGCUGCcgcggGCCCgGGCgCUG-GCGGCAg -3'
miRNA:   3'- -GCaCGACG-----CGGGgCCG-GACaUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.