miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 126992 0.67 0.484723
Target:  5'- --cGGACCGucaGGGGccgaccccgccgcaGGCgGCGGCCCg -3'
miRNA:   3'- cgaCCUGGC---CCCCuag-----------CCG-CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 125805 0.71 0.287139
Target:  5'- gGCuUGGGCCGGGGccgccgCGaGCGgGGCCg -3'
miRNA:   3'- -CG-ACCUGGCCCCcua---GC-CGCgCCGGg -5'
23842 3' -64.4 NC_005261.1 + 123189 0.73 0.223654
Target:  5'- gGCUGGugUGGGcGGAcccagccgccgcgUaaGCGCGGCCUg -3'
miRNA:   3'- -CGACCugGCCC-CCU-------------AgcCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 121798 0.69 0.378485
Target:  5'- gGCUGGGCaGGGGGcgcgUGGCugggcucuGCGGgCCg -3'
miRNA:   3'- -CGACCUGgCCCCCua--GCCG--------CGCCgGG- -5'
23842 3' -64.4 NC_005261.1 + 121154 0.68 0.430098
Target:  5'- --aGGACCGGGuaGGGuugcccgggcgcUCGGUGCacggggccggggccgGGCCCg -3'
miRNA:   3'- cgaCCUGGCCC--CCU------------AGCCGCG---------------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 119280 0.68 0.399749
Target:  5'- cGCUGGGCgGGGGcucgccgaggaagcGGagGGCGaGGCCUc -3'
miRNA:   3'- -CGACCUGgCCCC--------------CUagCCGCgCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 119221 0.66 0.523843
Target:  5'- -aUGGcccuGCCGGGGcGAgcgUGGCcgaucGCGGCCa -3'
miRNA:   3'- cgACC----UGGCCCC-CUa--GCCG-----CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 118914 0.66 0.54245
Target:  5'- uCUGGGuCCGGcgccgcGGGcgCGGCGCcgcgcggcuGGCCg -3'
miRNA:   3'- cGACCU-GGCC------CCCuaGCCGCG---------CCGGg -5'
23842 3' -64.4 NC_005261.1 + 118673 0.67 0.461758
Target:  5'- gGCUGaGGgCGGcGGGcgcuggcgcacgcgCGGCGUGGUCCu -3'
miRNA:   3'- -CGAC-CUgGCC-CCCua------------GCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 118348 0.7 0.346223
Target:  5'- gGCUGcuccucggccucucGGCCGGGcgcuGGggC-GCGCGGCCCg -3'
miRNA:   3'- -CGAC--------------CUGGCCC----CCuaGcCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 118012 0.67 0.468764
Target:  5'- cGCUGGACgcugucggacgcaCGcGGGGccCGGcCGCGacGCCCg -3'
miRNA:   3'- -CGACCUG-------------GC-CCCCuaGCC-GCGC--CGGG- -5'
23842 3' -64.4 NC_005261.1 + 112674 0.67 0.487409
Target:  5'- gGCUGGAgCGcgaGGGGcUgGGCGUcgaGGCCg -3'
miRNA:   3'- -CGACCUgGC---CCCCuAgCCGCG---CCGGg -5'
23842 3' -64.4 NC_005261.1 + 109121 0.68 0.418455
Target:  5'- --aGGG-CGGcGGuGUCGuGCGCGGCCCc -3'
miRNA:   3'- cgaCCUgGCC-CCcUAGC-CGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 98913 0.66 0.56127
Target:  5'- aGCgGG-UCGGcGGGGUCGGCuGCGGg-- -3'
miRNA:   3'- -CGaCCuGGCC-CCCUAGCCG-CGCCggg -5'
23842 3' -64.4 NC_005261.1 + 98709 0.72 0.262756
Target:  5'- aGCUgGGGCCGGGGuc-CGGCcuugggggcacGCGGCCg -3'
miRNA:   3'- -CGA-CCUGGCCCCcuaGCCG-----------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 98676 0.71 0.26869
Target:  5'- gGCgGGcuccGCCGGGGccggaGGCGCGGCCg -3'
miRNA:   3'- -CGaCC----UGGCCCCcuag-CCGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 98352 0.73 0.219067
Target:  5'- cGCgGGGgCGGGGG-UgGGCGCgGGCUCu -3'
miRNA:   3'- -CGaCCUgGCCCCCuAgCCGCG-CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 98182 0.7 0.326994
Target:  5'- cUUGGagccGCCGGGGGcgCGGCG-GGCa- -3'
miRNA:   3'- cGACC----UGGCCCCCuaGCCGCgCCGgg -5'
23842 3' -64.4 NC_005261.1 + 98089 0.68 0.418455
Target:  5'- cUUGGAgaauCUGGGGGcgCGGCggGCGGCg- -3'
miRNA:   3'- cGACCU----GGCCCCCuaGCCG--CGCCGgg -5'
23842 3' -64.4 NC_005261.1 + 97745 0.75 0.146566
Target:  5'- gGCaGGGgCGGGGcGGgcucggCGGCGCGGCCg -3'
miRNA:   3'- -CGaCCUgGCCCC-CUa-----GCCGCGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.