miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23843 5' -58 NC_005261.1 + 39788 0.66 0.825256
Target:  5'- gUCGCcgggggGCggcgCGGcCGCCGgCGCCAg -3'
miRNA:   3'- gAGCGa-----CGauuaGCC-GCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 101525 0.66 0.825256
Target:  5'- cCUCGUcGC-GGUCGcGCGCCGccucggcCGCCAc -3'
miRNA:   3'- -GAGCGaCGaUUAGC-CGCGGCa------GCGGU- -5'
23843 5' -58 NC_005261.1 + 31787 0.66 0.825256
Target:  5'- -gUGCUGCccg-CGGCGCaGUgCGCCGc -3'
miRNA:   3'- gaGCGACGauuaGCCGCGgCA-GCGGU- -5'
23843 5' -58 NC_005261.1 + 18695 0.66 0.825256
Target:  5'- --gGCUGUUG--CGGCGCaCGUCGgCGa -3'
miRNA:   3'- gagCGACGAUuaGCCGCG-GCAGCgGU- -5'
23843 5' -58 NC_005261.1 + 106100 0.66 0.825256
Target:  5'- aUCGCgac--GUCGGcCGgCGUCGCCGg -3'
miRNA:   3'- gAGCGacgauUAGCC-GCgGCAGCGGU- -5'
23843 5' -58 NC_005261.1 + 105154 0.66 0.824411
Target:  5'- cCUCGCgGCUcGAgggCGGCguccacggggcccGCCGcCGCCGc -3'
miRNA:   3'- -GAGCGaCGA-UUa--GCCG-------------CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 60337 0.66 0.816731
Target:  5'- -aCGgUGUUug-CGGCGCCGcggccgcgCGCCAg -3'
miRNA:   3'- gaGCgACGAuuaGCCGCGGCa-------GCGGU- -5'
23843 5' -58 NC_005261.1 + 73148 0.66 0.816731
Target:  5'- gCUCGCgccGCcAggCGGCGuuGUUGCUc -3'
miRNA:   3'- -GAGCGa--CGaUuaGCCGCggCAGCGGu -5'
23843 5' -58 NC_005261.1 + 118579 0.66 0.816731
Target:  5'- -gCGCgGCgg--CGcGCGCCGcCGCCGc -3'
miRNA:   3'- gaGCGaCGauuaGC-CGCGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 2735 0.66 0.816731
Target:  5'- aCUUGCgcuUGCgccgCGGCggGCCGUCGCg- -3'
miRNA:   3'- -GAGCG---ACGauuaGCCG--CGGCAGCGgu -5'
23843 5' -58 NC_005261.1 + 55399 0.66 0.816731
Target:  5'- -cCGCUGagacugcauCUAcgCGcGCGCCGgcuggCGCCAc -3'
miRNA:   3'- gaGCGAC---------GAUuaGC-CGCGGCa----GCGGU- -5'
23843 5' -58 NC_005261.1 + 33742 0.66 0.816731
Target:  5'- cCUCGCg------CGGCGCCGggGCCGg -3'
miRNA:   3'- -GAGCGacgauuaGCCGCGGCagCGGU- -5'
23843 5' -58 NC_005261.1 + 131868 0.66 0.816731
Target:  5'- --gGCUGCUugagcUGGCgGCCGcCGCCGc -3'
miRNA:   3'- gagCGACGAuua--GCCG-CGGCaGCGGU- -5'
23843 5' -58 NC_005261.1 + 29229 0.66 0.808039
Target:  5'- -cCGCgcagGCUAcgccgCGGCGCCG-CGCg- -3'
miRNA:   3'- gaGCGa---CGAUua---GCCGCGGCaGCGgu -5'
23843 5' -58 NC_005261.1 + 66548 0.66 0.808039
Target:  5'- --aGCaGCUGGUCGGCcguGCCG-CGCUc -3'
miRNA:   3'- gagCGaCGAUUAGCCG---CGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 91742 0.66 0.802748
Target:  5'- uUCGCgGCgcucacgccggCGGCGCaaaGUCGUCAa -3'
miRNA:   3'- gAGCGaCGauua-------GCCGCGg--CAGCGGU- -5'
23843 5' -58 NC_005261.1 + 118762 0.66 0.79919
Target:  5'- gUUGC-GCUAcgCGcGCGCCGaCGCUg -3'
miRNA:   3'- gAGCGaCGAUuaGC-CGCGGCaGCGGu -5'
23843 5' -58 NC_005261.1 + 91864 0.66 0.79919
Target:  5'- -cCGCcgGCaccUCGGCGuCCGUCGCg- -3'
miRNA:   3'- gaGCGa-CGauuAGCCGC-GGCAGCGgu -5'
23843 5' -58 NC_005261.1 + 117220 0.66 0.79919
Target:  5'- -cCGCUGCc--UgGGCGCCGagucCGCCu -3'
miRNA:   3'- gaGCGACGauuAgCCGCGGCa---GCGGu -5'
23843 5' -58 NC_005261.1 + 103449 0.66 0.790191
Target:  5'- cCUCGCggucgGCcg--CcGCGcCCGUCGCCAg -3'
miRNA:   3'- -GAGCGa----CGauuaGcCGC-GGCAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.