miRNA display CGI


Results 21 - 40 of 737 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 3' -60.9 NC_005261.1 + 134345 0.8 0.129002
Target:  5'- aCCGCAAGcccccgcGCCGCCGCgCGGGgGGCGGc -3'
miRNA:   3'- gGGCGUUC-------CGGUGGCG-GCUUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134177 0.67 0.64916
Target:  5'- uCCCGCugcuugcggAGGGCCuggcgcggcucgGCgCGCgGGucGCGGCGGc -3'
miRNA:   3'- -GGGCG---------UUCCGG------------UG-GCGgCU--UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 134032 0.7 0.495463
Target:  5'- gCCGCGcucgcGGCCAUgGCCGGccACGGCc- -3'
miRNA:   3'- gGGCGUu----CCGGUGgCGGCU--UGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 133830 0.66 0.726389
Target:  5'- gCUGCGcGGCCGCgugcgCGCCGuggcCGGCGc -3'
miRNA:   3'- gGGCGUuCCGGUG-----GCGGCuu--GCCGCc -5'
23844 3' -60.9 NC_005261.1 + 133360 0.71 0.416292
Target:  5'- gCCgCGCAGGGCUucgGCUGCCu-GCGcGCGGc -3'
miRNA:   3'- -GG-GCGUUCCGG---UGGCGGcuUGC-CGCC- -5'
23844 3' -60.9 NC_005261.1 + 133216 0.68 0.590489
Target:  5'- gCCGuCGAGGCCGa-GCUGGggcccuacAUGGCGGa -3'
miRNA:   3'- gGGC-GUUCCGGUggCGGCU--------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 133162 0.74 0.289923
Target:  5'- gCCGUcGGcGUCGCCGCCGAcaaccGCGGCGc -3'
miRNA:   3'- gGGCGuUC-CGGUGGCGGCU-----UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 133095 0.75 0.271014
Target:  5'- -gCGCAAGGCCGCCGucaaCCGcGCGGCc- -3'
miRNA:   3'- ggGCGUUCCGGUGGC----GGCuUGCCGcc -5'
23844 3' -60.9 NC_005261.1 + 133026 0.72 0.399768
Target:  5'- aCCCGCGGGcgcGCCACCGCgcacgcacgugcUGcGCGGCGu -3'
miRNA:   3'- -GGGCGUUC---CGGUGGCG------------GCuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 132904 0.8 0.126149
Target:  5'- gCCGC-GGGCgG-CGCCGAGCGGCGGc -3'
miRNA:   3'- gGGCGuUCCGgUgGCGGCUUGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 132695 0.68 0.58757
Target:  5'- uUCCGCGuGGCCGugcCCGucCCGGcgcccuaccucauuGCGGCGGc -3'
miRNA:   3'- -GGGCGUuCCGGU---GGC--GGCU--------------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 132607 0.7 0.494544
Target:  5'- gCCCgGCGA-GCCGCCagggggcgcuggcGCCGAggacgcgggcGCGGCGGc -3'
miRNA:   3'- -GGG-CGUUcCGGUGG-------------CGGCU----------UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 132396 0.77 0.191058
Target:  5'- uCCC-CGAGGCCGCCGCCGAcgccUGGCc- -3'
miRNA:   3'- -GGGcGUUCCGGUGGCGGCUu---GCCGcc -5'
23844 3' -60.9 NC_005261.1 + 132336 0.71 0.42471
Target:  5'- aCCUGCAcgGGGCCAugcgcagcuuCCGCC--GCGGCGc -3'
miRNA:   3'- -GGGCGU--UCCGGU----------GGCGGcuUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 132080 0.71 0.42471
Target:  5'- gCCGCcgucGCCGCUGCCGcgGAgGGCGGc -3'
miRNA:   3'- gGGCGuuc-CGGUGGCGGC--UUgCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 131977 0.74 0.296453
Target:  5'- gCCGCGcGGCCACCagGCCuucgcagucgcGGACGGCGa -3'
miRNA:   3'- gGGCGUuCCGGUGG--CGG-----------CUUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 131869 0.72 0.360341
Target:  5'- gCUGCuugagcuggcGGCCGCCGCCGcacgcGACGGCGc -3'
miRNA:   3'- gGGCGuu--------CCGGUGGCGGC-----UUGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 131803 0.7 0.494544
Target:  5'- gCCCGCcgcgccuGAcGGCgCGCCGCCGcuugacGCGGCGc -3'
miRNA:   3'- -GGGCG-------UU-CCG-GUGGCGGCu-----UGCCGCc -5'
23844 3' -60.9 NC_005261.1 + 131748 0.73 0.345348
Target:  5'- -aCGCGGacGGCaCGCCgGCCGGcGCGGCGGg -3'
miRNA:   3'- ggGCGUU--CCG-GUGG-CGGCU-UGCCGCC- -5'
23844 3' -60.9 NC_005261.1 + 131670 0.67 0.639372
Target:  5'- gUCUGCGAGgguGCgACCGCCcuGCGcGCGGc -3'
miRNA:   3'- -GGGCGUUC---CGgUGGCGGcuUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.