miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23845 3' -51.2 NC_005261.1 + 32249 0.66 0.991153
Target:  5'- cGGCCGC---GCUGC-UGGAGccGCAcGCc -3'
miRNA:   3'- -CCGGCGacaUGAUGuACCUCa-UGU-CG- -5'
23845 3' -51.2 NC_005261.1 + 131260 0.66 0.989877
Target:  5'- aGGuCCGCUGc-CUGCGU-GAGUACAu- -3'
miRNA:   3'- -CC-GGCGACauGAUGUAcCUCAUGUcg -5'
23845 3' -51.2 NC_005261.1 + 1407 0.66 0.989877
Target:  5'- cGGCCGCg--GCgGCGgcGGGG-GCGGCg -3'
miRNA:   3'- -CCGGCGacaUGaUGUa-CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 80104 0.66 0.989877
Target:  5'- cGCCGCgGUACcgGCuUGGGcgccgcgGCAGCg -3'
miRNA:   3'- cCGGCGaCAUGa-UGuACCUca-----UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 41888 0.66 0.988461
Target:  5'- cGCgGC-GUACUcgcgcaGCGUGGGGUugGGa -3'
miRNA:   3'- cCGgCGaCAUGA------UGUACCUCAugUCg -5'
23845 3' -51.2 NC_005261.1 + 74914 0.66 0.986895
Target:  5'- uGGCCGCgcggGggaggGCgaggACggGGAcUGCGGCg -3'
miRNA:   3'- -CCGGCGa---Ca----UGa---UGuaCCUcAUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 39065 0.66 0.986895
Target:  5'- aGCCGCgaaaGUACUACAcccgcuccucGGAcgGCGGCa -3'
miRNA:   3'- cCGGCGa---CAUGAUGUa---------CCUcaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 41631 0.66 0.985171
Target:  5'- cGGCCcucgGCgaccuugagGUGC-GCGUGGAG-GCGGCu -3'
miRNA:   3'- -CCGG----CGa--------CAUGaUGUACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 35221 0.66 0.985171
Target:  5'- uGGCgGCUGgaggggACccgGCA-GGAGgagagGCGGCg -3'
miRNA:   3'- -CCGgCGACa-----UGa--UGUaCCUCa----UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 75042 0.66 0.98328
Target:  5'- cGGCCGaccUGCUGgcCAUGGuGUACAccGCg -3'
miRNA:   3'- -CCGGCgacAUGAU--GUACCuCAUGU--CG- -5'
23845 3' -51.2 NC_005261.1 + 81274 0.66 0.98328
Target:  5'- cGGCCGcCUGcGCgagccGGAGcGCGGCg -3'
miRNA:   3'- -CCGGC-GACaUGauguaCCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 127495 0.66 0.98328
Target:  5'- uGGCgGCUGc-CUGCcgGGcGUACucGGCg -3'
miRNA:   3'- -CCGgCGACauGAUGuaCCuCAUG--UCG- -5'
23845 3' -51.2 NC_005261.1 + 109849 0.67 0.981211
Target:  5'- uGCCGUUGgugGCgGCuccUGGGG-GCAGCg -3'
miRNA:   3'- cCGGCGACa--UGaUGu--ACCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 134167 0.67 0.981211
Target:  5'- gGGCUGCUGcucccGCUGCuugcGGAGggccuggcGCGGCu -3'
miRNA:   3'- -CCGGCGACa----UGAUGua--CCUCa-------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 88626 0.67 0.981211
Target:  5'- cGCUGCUGg---GCAUgucGGAGgACGGCa -3'
miRNA:   3'- cCGGCGACaugaUGUA---CCUCaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 23905 0.67 0.981211
Target:  5'- gGGCuCGCUGgGCUGgGccagcUGGGGUgggcucaccucGCGGCg -3'
miRNA:   3'- -CCG-GCGACaUGAUgU-----ACCUCA-----------UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 35976 0.67 0.981211
Target:  5'- cGGCCGCUGUAgcgGCGgcGGcuccugGCGGCg -3'
miRNA:   3'- -CCGGCGACAUga-UGUa-CCuca---UGUCG- -5'
23845 3' -51.2 NC_005261.1 + 89852 0.67 0.979882
Target:  5'- gGGCCGCggcgucaucggcgaGUACUGCAUucaGGAcu-CGGCg -3'
miRNA:   3'- -CCGGCGa-------------CAUGAUGUA---CCUcauGUCG- -5'
23845 3' -51.2 NC_005261.1 + 70869 0.67 0.978957
Target:  5'- cGGCCGCcGUG--GCGUGGccgGCGGUg -3'
miRNA:   3'- -CCGGCGaCAUgaUGUACCucaUGUCG- -5'
23845 3' -51.2 NC_005261.1 + 84821 0.67 0.978957
Target:  5'- uGCCGUUGUAUUGCugAUGcuGAGgccCAGCa -3'
miRNA:   3'- cCGGCGACAUGAUG--UAC--CUCau-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.