miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 3' -63.5 NC_005261.1 + 48509 0.65 0.573287
Target:  5'- uGCGCaGGUucuugacGCGCgCGCCGCCUGggaaaguCUGCg- -3'
miRNA:   3'- -CGCG-CUA-------CGCG-GCGGCGGAC-------GACGgc -5'
23846 3' -63.5 NC_005261.1 + 130713 0.66 0.565544
Target:  5'- cGC-CGAggacgucaccuucGCGCUGCCGCCgacaugaucgccgcGCUGCUGg -3'
miRNA:   3'- -CGcGCUa------------CGCGGCGGCGGa-------------CGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 77142 0.66 0.565544
Target:  5'- aGUGgGAcaccgucucGCGCCGCCGCC-GCgagGCgGg -3'
miRNA:   3'- -CGCgCUa--------CGCGGCGGCGGaCGa--CGgC- -5'
23846 3' -63.5 NC_005261.1 + 74287 0.66 0.565544
Target:  5'- cGgGCGggGCgGUCGCCGCCggGCaGCa- -3'
miRNA:   3'- -CgCGCuaCG-CGGCGGCGGa-CGaCGgc -5'
23846 3' -63.5 NC_005261.1 + 46715 0.66 0.565544
Target:  5'- aGCGCGAcGacggccucguaCGCCGgCGCgUGCacgUGCCGc -3'
miRNA:   3'- -CGCGCUaC-----------GCGGCgGCGgACG---ACGGC- -5'
23846 3' -63.5 NC_005261.1 + 61242 0.66 0.565544
Target:  5'- gGCGCGAgcucgacuCGCUgGCCGCCUcCgggGCCGu -3'
miRNA:   3'- -CGCGCUac------GCGG-CGGCGGAcGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 107933 0.66 0.565544
Target:  5'- cGCGCGGauCGCCGCCacguaguCCgUGCgcgGCCGc -3'
miRNA:   3'- -CGCGCUacGCGGCGGc------GG-ACGa--CGGC- -5'
23846 3' -63.5 NC_005261.1 + 108731 0.66 0.565544
Target:  5'- cGCGCGGgccagcggcgGCGCCGCgGCgUccGCggcgcGCCGc -3'
miRNA:   3'- -CGCGCUa---------CGCGGCGgCGgA--CGa----CGGC- -5'
23846 3' -63.5 NC_005261.1 + 53870 0.66 0.565544
Target:  5'- aGCGCGgcGCGCgCGCUGUCgagucgaaGCggGCCc -3'
miRNA:   3'- -CGCGCuaCGCG-GCGGCGGa-------CGa-CGGc -5'
23846 3' -63.5 NC_005261.1 + 19766 0.66 0.564578
Target:  5'- gGCGCGG-GCcCCGUCGCCUcgaacacGCgGCCc -3'
miRNA:   3'- -CGCGCUaCGcGGCGGCGGA-------CGaCGGc -5'
23846 3' -63.5 NC_005261.1 + 5124 0.66 0.564578
Target:  5'- gGCGCGGgcggcccgccgGCGCuCGCgCGCCUcggcccgGCggGCCGc -3'
miRNA:   3'- -CGCGCUa----------CGCG-GCG-GCGGA-------CGa-CGGC- -5'
23846 3' -63.5 NC_005261.1 + 90755 0.66 0.563612
Target:  5'- gGCGCGGgacuuccccgagGcCGCCgagGCCGCUgcgGCgGCCGg -3'
miRNA:   3'- -CGCGCUa-----------C-GCGG---CGGCGGa--CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 90002 0.66 0.560718
Target:  5'- cCGCGucuucaccugccugcUGCGCCuggcccgggagcgggGCUuCCUGCUGCCGg -3'
miRNA:   3'- cGCGCu--------------ACGCGG---------------CGGcGGACGACGGC- -5'
23846 3' -63.5 NC_005261.1 + 83553 0.66 0.559755
Target:  5'- cGCGCGAagaacucggcgggcgUGC-CCGCggCGCCcGCgGCCGc -3'
miRNA:   3'- -CGCGCU---------------ACGcGGCG--GCGGaCGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 68137 0.66 0.555904
Target:  5'- gGCGCGGcgaccGCGCCGUgGCCgGCUacacgcGCgCGg -3'
miRNA:   3'- -CGCGCUa----CGCGGCGgCGGaCGA------CG-GC- -5'
23846 3' -63.5 NC_005261.1 + 117582 0.66 0.555904
Target:  5'- cCGCGcc-CGCCGCUGUCgaucCUGCCGa -3'
miRNA:   3'- cGCGCuacGCGGCGGCGGac--GACGGC- -5'
23846 3' -63.5 NC_005261.1 + 77465 0.66 0.555904
Target:  5'- gGCGCGGcugcagccGCGCCcCCGCCcGCcccguacuuccUGCCGc -3'
miRNA:   3'- -CGCGCUa-------CGCGGcGGCGGaCG-----------ACGGC- -5'
23846 3' -63.5 NC_005261.1 + 133787 0.66 0.555904
Target:  5'- uCGUGcgGCGCaucCCGCCcggGCUGCuCGa -3'
miRNA:   3'- cGCGCuaCGCGgc-GGCGGa--CGACG-GC- -5'
23846 3' -63.5 NC_005261.1 + 81365 0.66 0.555904
Target:  5'- uGCGgGggGCGCCGggcUCGCUggggGC-GCCGg -3'
miRNA:   3'- -CGCgCuaCGCGGC---GGCGGa---CGaCGGC- -5'
23846 3' -63.5 NC_005261.1 + 80386 0.66 0.555904
Target:  5'- aGCGCGAaagUGUgGCCGUCGCUcacaaagGUcGCCGa -3'
miRNA:   3'- -CGCGCU---ACG-CGGCGGCGGa------CGaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.