miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23846 5' -53.6 NC_005261.1 + 119554 0.66 0.965842
Target:  5'- cCGCcgCg--GGGCCGCaaGugGaUGCGCu -3'
miRNA:   3'- -GCGuaGauaUUCGGCGc-CugC-ACGCG- -5'
23846 5' -53.6 NC_005261.1 + 98294 0.66 0.965842
Target:  5'- gCGCGUCcgc-GGCCucGgGGGCGgGCGCc -3'
miRNA:   3'- -GCGUAGauauUCGG--CgCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 136424 0.66 0.965842
Target:  5'- cCGCAgUCgc-AGGCCcccucGCGGGCGU-CGCa -3'
miRNA:   3'- -GCGU-AGauaUUCGG-----CGCCUGCAcGCG- -5'
23846 5' -53.6 NC_005261.1 + 92806 0.66 0.965842
Target:  5'- --gGUCgccGGGCgCGCGGGCGUgggaccGCGCg -3'
miRNA:   3'- gcgUAGauaUUCG-GCGCCUGCA------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 79051 0.66 0.965842
Target:  5'- gGCGUCguccuUGAGCgCGCGcGugGUgaucggguacaGCGCc -3'
miRNA:   3'- gCGUAGau---AUUCG-GCGC-CugCA-----------CGCG- -5'
23846 5' -53.6 NC_005261.1 + 116424 0.66 0.965842
Target:  5'- gGCGUCg--GGGCCcCcGACGUGuCGCc -3'
miRNA:   3'- gCGUAGauaUUCGGcGcCUGCAC-GCG- -5'
23846 5' -53.6 NC_005261.1 + 74049 0.66 0.965842
Target:  5'- gCGCGcCgggGGGCUGCGGcaGC-UGCGCg -3'
miRNA:   3'- -GCGUaGauaUUCGGCGCC--UGcACGCG- -5'
23846 5' -53.6 NC_005261.1 + 13479 0.66 0.965842
Target:  5'- uGCAcgUCUcguAGauGCGGACGaGCGCg -3'
miRNA:   3'- gCGU--AGAuauUCggCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 116498 0.66 0.965842
Target:  5'- nCGCGg-UAUAAagagcgccGCCGCGG-CG-GCGCg -3'
miRNA:   3'- -GCGUagAUAUU--------CGGCGCCuGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 134937 0.66 0.965842
Target:  5'- cCGCGgaggacGAGCCGaUGGGCGaggGCGCc -3'
miRNA:   3'- -GCGUagaua-UUCGGC-GCCUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 106903 0.66 0.965842
Target:  5'- uGCGUCguccgcGCCGCGG-CGcGCuGCa -3'
miRNA:   3'- gCGUAGauauu-CGGCGCCuGCaCG-CG- -5'
23846 5' -53.6 NC_005261.1 + 29855 0.66 0.965842
Target:  5'- uGC-UCgcc-GGCCGCGcGGCGccgGCGCc -3'
miRNA:   3'- gCGuAGauauUCGGCGC-CUGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 97389 0.66 0.965184
Target:  5'- gCGCggCUuucgcgccuGCCGCGGGCuuggcggGCGCg -3'
miRNA:   3'- -GCGuaGAuauu-----CGGCGCCUGca-----CGCG- -5'
23846 5' -53.6 NC_005261.1 + 20955 0.66 0.962462
Target:  5'- gGCuGUUUAcgAGGUCGUGGACcgcgGCGCg -3'
miRNA:   3'- gCG-UAGAUa-UUCGGCGCCUGca--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 60339 0.66 0.962462
Target:  5'- gGUGUUUGcGGcGCCGCGGcCGcGCGCc -3'
miRNA:   3'- gCGUAGAUaUU-CGGCGCCuGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 85005 0.66 0.962462
Target:  5'- uGCAUgac--GGCCGCGGG-GUcGCGCg -3'
miRNA:   3'- gCGUAgauauUCGGCGCCUgCA-CGCG- -5'
23846 5' -53.6 NC_005261.1 + 35087 0.66 0.962462
Target:  5'- uCGCc-CUcgGAGCCGCGGugaGCG-GCGa -3'
miRNA:   3'- -GCGuaGAuaUUCGGCGCC---UGCaCGCg -5'
23846 5' -53.6 NC_005261.1 + 97107 0.66 0.962462
Target:  5'- gCGCcagcc-GGGCCGCGGcCGgagGCGCc -3'
miRNA:   3'- -GCGuagauaUUCGGCGCCuGCa--CGCG- -5'
23846 5' -53.6 NC_005261.1 + 21689 0.66 0.962462
Target:  5'- gGC-UCgagcgcGUCGCGGGCGaGCGCu -3'
miRNA:   3'- gCGuAGauauu-CGGCGCCUGCaCGCG- -5'
23846 5' -53.6 NC_005261.1 + 74275 0.66 0.962462
Target:  5'- gCGCGUCc----GCgGCGGGCGggGCGg -3'
miRNA:   3'- -GCGUAGauauuCGgCGCCUGCa-CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.