miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 5' -47.6 NC_005261.1 + 36594 0.65 0.999772
Target:  5'- gGCCACCGggggggggCAGCGcuccu---GCGCCc -3'
miRNA:   3'- -CGGUGGUa-------GUCGCuucuuauuUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 109072 0.65 0.999766
Target:  5'- cGgCGCC-UCGGCGAucaugccguuggccAGGucccGGACGCCg -3'
miRNA:   3'- -CgGUGGuAGUCGCU--------------UCUua--UUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 112562 0.66 0.999748
Target:  5'- cGCUACC-UCGccuaccucgagggcuGCGAGGGcgucguGUGGACGCUc -3'
miRNA:   3'- -CGGUGGuAGU---------------CGCUUCU------UAUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 58225 0.66 0.999742
Target:  5'- aGCgCGCCcgCGGCGgcGGGguccucggccaugccGCGCCg -3'
miRNA:   3'- -CG-GUGGuaGUCGCuuCUUauu------------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 118513 0.66 0.999729
Target:  5'- cGCCGC--UCGGCGAGGcgcccugcccCGCCg -3'
miRNA:   3'- -CGGUGguAGUCGCUUCuuauuu----GCGG- -5'
23847 5' -47.6 NC_005261.1 + 87674 0.66 0.999723
Target:  5'- -gCACCGcCAGCGguGAGUcgcagcuccGCGCCg -3'
miRNA:   3'- cgGUGGUaGUCGCuuCUUAuu-------UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 43794 0.66 0.999723
Target:  5'- gGgCGCCGcgGGUGAGGG---GGCGCCg -3'
miRNA:   3'- -CgGUGGUagUCGCUUCUuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35977 0.66 0.999723
Target:  5'- gGCCGCUGUagCGGCGgcGGcuccuggcggcgGUAAuCGCCg -3'
miRNA:   3'- -CGGUGGUA--GUCGCuuCU------------UAUUuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 47590 0.66 0.999723
Target:  5'- aGCCGCgCG-CGcGCGAGGGAgc--CGCCc -3'
miRNA:   3'- -CGGUG-GUaGU-CGCUUCUUauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 31117 0.66 0.999723
Target:  5'- cGCCGCCGaCGGCGGcuuc----CGCCg -3'
miRNA:   3'- -CGGUGGUaGUCGCUucuuauuuGCGG- -5'
23847 5' -47.6 NC_005261.1 + 35055 0.66 0.999723
Target:  5'- gGCgGCCGcgCGGCGgcGGucuccGCGCCc -3'
miRNA:   3'- -CGgUGGUa-GUCGCuuCUuauu-UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 32133 0.66 0.999723
Target:  5'- cGCCGCCAaCcGCuGggGGcucggcGCGCCg -3'
miRNA:   3'- -CGGUGGUaGuCG-CuuCUuauu--UGCGG- -5'
23847 5' -47.6 NC_005261.1 + 30785 0.66 0.999723
Target:  5'- gGCCGCgG-CGGUGGAGGugcuGGgGCCg -3'
miRNA:   3'- -CGGUGgUaGUCGCUUCUuau-UUgCGG- -5'
23847 5' -47.6 NC_005261.1 + 35873 0.66 0.999723
Target:  5'- gGCCGCCuggguGCGA-----GAACGCCu -3'
miRNA:   3'- -CGGUGGuagu-CGCUucuuaUUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 117520 0.66 0.999702
Target:  5'- cGCCACgAUgAGCGuguccaccgcGGCGCCg -3'
miRNA:   3'- -CGGUGgUAgUCGCuucuuau---UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 70079 0.66 0.99968
Target:  5'- gGCCACCgaagcccagacguacGcCGGCGA-GAAgcucGGCGCCu -3'
miRNA:   3'- -CGGUGG---------------UaGUCGCUuCUUau--UUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 50808 0.66 0.999648
Target:  5'- cGCCGCCAugacgggcUCcGCGcGGcuu-GGCGCCg -3'
miRNA:   3'- -CGGUGGU--------AGuCGCuUCuuauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 51356 0.66 0.999648
Target:  5'- cGCUggGCUGUcCGGCGcGGAGUAcGCGCa -3'
miRNA:   3'- -CGG--UGGUA-GUCGCuUCUUAUuUGCGg -5'
23847 5' -47.6 NC_005261.1 + 1834 0.66 0.999648
Target:  5'- aGCgGCC-UCGGCGcgcgcGAA--GGCGCCg -3'
miRNA:   3'- -CGgUGGuAGUCGCuu---CUUauUUGCGG- -5'
23847 5' -47.6 NC_005261.1 + 121023 0.66 0.999648
Target:  5'- cCCGCU---GGCGcGGGAgAAGCGCCg -3'
miRNA:   3'- cGGUGGuagUCGCuUCUUaUUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.