miRNA display CGI


Results 1 - 20 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23848 5' -66.3 NC_005261.1 + 99893 0.66 0.421465
Target:  5'- aGGGCGuugaccgccacCCGGCCcGCgaGCGCCuCGGc -3'
miRNA:   3'- cUCCGC-----------GGCCGGaCGgaCGUGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 102807 0.66 0.421465
Target:  5'- -cGGCGCCcaGCC-GCC-GCGCgCCGGUc -3'
miRNA:   3'- cuCCGCGGc-CGGaCGGaCGUG-GGCCA- -5'
23848 5' -66.3 NC_005261.1 + 34047 0.66 0.421465
Target:  5'- --cGCGCUGcCCUGCCUGCacgccuucuGCCUGGc -3'
miRNA:   3'- cucCGCGGCcGGACGGACG---------UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 134998 0.66 0.421465
Target:  5'- cGGGGCGCCccuGGCgCggcggGCCcGCACgCGGc -3'
miRNA:   3'- -CUCCGCGG---CCG-Ga----CGGaCGUGgGCCa -5'
23848 5' -66.3 NC_005261.1 + 125300 0.66 0.421465
Target:  5'- cGGGCGCCGGaCCcGCggGCGCuCCGcGg -3'
miRNA:   3'- cUCCGCGGCC-GGaCGgaCGUG-GGC-Ca -5'
23848 5' -66.3 NC_005261.1 + 6235 0.66 0.420627
Target:  5'- aGGuGCGCCcggggagGGCCUGCCcGCcCCgCGGg -3'
miRNA:   3'- cUC-CGCGG-------CCGGACGGaCGuGG-GCCa -5'
23848 5' -66.3 NC_005261.1 + 34920 0.66 0.41979
Target:  5'- cGGGGCG-CGGCCacgcggggggcgGCCggcGCgACCCGGg -3'
miRNA:   3'- -CUCCGCgGCCGGa-----------CGGa--CG-UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 67885 0.66 0.41979
Target:  5'- -cGGCGCgGGUaagcGCCgcauuuaacccgGCGCCCGGg -3'
miRNA:   3'- cuCCGCGgCCGga--CGGa-----------CGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 91138 0.66 0.413132
Target:  5'- cGAGGCcucaGCCGuGCC-GCCcgGCgagugGCCCGGg -3'
miRNA:   3'- -CUCCG----CGGC-CGGaCGGa-CG-----UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 43392 0.66 0.413132
Target:  5'- -cGGUGCCGGCaCcGUCcagGCGCCgGGg -3'
miRNA:   3'- cuCCGCGGCCG-GaCGGa--CGUGGgCCa -5'
23848 5' -66.3 NC_005261.1 + 5335 0.66 0.413132
Target:  5'- aGAGGCGCggguCGGCCaGCCgGCuGgUCGGUg -3'
miRNA:   3'- -CUCCGCG----GCCGGaCGGaCG-UgGGCCA- -5'
23848 5' -66.3 NC_005261.1 + 87897 0.66 0.413132
Target:  5'- aGAGG-GCgGGCCgggcguaccgugUGUCUGCcgccACCCGGg -3'
miRNA:   3'- -CUCCgCGgCCGG------------ACGGACG----UGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 32431 0.66 0.413132
Target:  5'- gGAGcccCGCCGGCCUgggcGCCgGCAcagucaccCCCGGg -3'
miRNA:   3'- -CUCc--GCGGCCGGA----CGGaCGU--------GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 127495 0.66 0.413132
Target:  5'- -uGGCGgCuGCCUGCCgggcGUACUCGGc -3'
miRNA:   3'- cuCCGCgGcCGGACGGa---CGUGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 23741 0.66 0.413132
Target:  5'- cGAGGCGCguccgggaggGGCggGCUUGC-CCCGGg -3'
miRNA:   3'- -CUCCGCGg---------CCGgaCGGACGuGGGCCa -5'
23848 5' -66.3 NC_005261.1 + 105126 0.66 0.413132
Target:  5'- cGGGCGCgGGCC-GCCgGCGCgCGc- -3'
miRNA:   3'- cUCCGCGgCCGGaCGGaCGUGgGCca -5'
23848 5' -66.3 NC_005261.1 + 130600 0.66 0.413132
Target:  5'- --cGCGCCuGGCCcgucuuUGCCUGCGCCUu-- -3'
miRNA:   3'- cucCGCGG-CCGG------ACGGACGUGGGcca -5'
23848 5' -66.3 NC_005261.1 + 33832 0.66 0.413132
Target:  5'- gGGGGCGCgGGCCcccugGCgCUGgGCgggCCGGg -3'
miRNA:   3'- -CUCCGCGgCCGGa----CG-GACgUG---GGCCa -5'
23848 5' -66.3 NC_005261.1 + 27241 0.66 0.412304
Target:  5'- gGAGGCGCCugggguggggcggGGUgUGCggGCAgCCCGGc -3'
miRNA:   3'- -CUCCGCGG-------------CCGgACGgaCGU-GGGCCa -5'
23848 5' -66.3 NC_005261.1 + 92929 0.66 0.412304
Target:  5'- --cGUGCCGGCggagcagCUGCCcgGCGuCCCGGa -3'
miRNA:   3'- cucCGCGGCCG-------GACGGa-CGU-GGGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.