miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 1805 0.65 0.668072
Target:  5'- gGCGGCGCcccgggguagagccGCGCGUaagCGGCCucGGCg -3'
miRNA:   3'- gCGUCGCG--------------CGCGCAca-GCCGGcaCUG- -5'
23853 5' -61.7 NC_005261.1 + 103891 0.66 0.665117
Target:  5'- gGCGGCGCGCcaagccgggccacccGCGccgccagGUCGGgCGcGGCg -3'
miRNA:   3'- gCGUCGCGCG---------------CGCa------CAGCCgGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 52962 0.66 0.661174
Target:  5'- aGCAGCGcCGCGCcgGUG-CGgcGCCGgcaGGCg -3'
miRNA:   3'- gCGUCGC-GCGCG--CACaGC--CGGCa--CUG- -5'
23853 5' -61.7 NC_005261.1 + 99712 0.66 0.661174
Target:  5'- cCGCcacGGuCGCGCGCGUGgccgcgucaGGCgCGUGcCg -3'
miRNA:   3'- -GCG---UC-GCGCGCGCACag-------CCG-GCACuG- -5'
23853 5' -61.7 NC_005261.1 + 11484 0.66 0.661174
Target:  5'- gGCGGgGCGgGgGUGcCGGCuCGaGGCu -3'
miRNA:   3'- gCGUCgCGCgCgCACaGCCG-GCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 15502 0.66 0.661174
Target:  5'- uGCgGGCgGgGCGUGUGUCGG-CGUG-Ca -3'
miRNA:   3'- gCG-UCG-CgCGCGCACAGCCgGCACuG- -5'
23853 5' -61.7 NC_005261.1 + 47898 0.66 0.661174
Target:  5'- gGCGGCG-GCGCGagGUCcuccaaccgcgcGGCCGUcACg -3'
miRNA:   3'- gCGUCGCgCGCGCa-CAG------------CCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 64298 0.66 0.661174
Target:  5'- -cCAGCGUGCGCaUGUuucgcgucgCGGCCGUaGCc -3'
miRNA:   3'- gcGUCGCGCGCGcACA---------GCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 64489 0.66 0.661174
Target:  5'- uGCAGCgggugGCGCGgGUGcUCGGggcCCGcgGGCg -3'
miRNA:   3'- gCGUCG-----CGCGCgCAC-AGCC---GGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 77080 0.66 0.658215
Target:  5'- gCGCgaGGCGCugGCGCGgacgcugcucucgaCGGCCGUGAa -3'
miRNA:   3'- -GCG--UCGCG--CGCGCaca-----------GCCGGCACUg -5'
23853 5' -61.7 NC_005261.1 + 54151 0.66 0.651302
Target:  5'- aCGCGGcCGUGCGCGggGUUG-CCGggaaGACc -3'
miRNA:   3'- -GCGUC-GCGCGCGCa-CAGCcGGCa---CUG- -5'
23853 5' -61.7 NC_005261.1 + 92597 0.66 0.651302
Target:  5'- gCGCAGcCGCucgcgGCGCGUGcCGGggccCCG-GGCg -3'
miRNA:   3'- -GCGUC-GCG-----CGCGCACaGCC----GGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 93423 0.66 0.651302
Target:  5'- cCGCGccccGCGaUGUGCuUGagGGCCGUGGCc -3'
miRNA:   3'- -GCGU----CGC-GCGCGcACagCCGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 29972 0.66 0.651302
Target:  5'- gGCGGCGCgGUGCGccGcCGGCgCGUccGGCa -3'
miRNA:   3'- gCGUCGCG-CGCGCa-CaGCCG-GCA--CUG- -5'
23853 5' -61.7 NC_005261.1 + 74709 0.66 0.651302
Target:  5'- gCGCgGGCGCGgaaccgggcCGCGgcagCGGCCGcgGACa -3'
miRNA:   3'- -GCG-UCGCGC---------GCGCaca-GCCGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 95658 0.66 0.651302
Target:  5'- gCGCGGCGC-CGCGacgGgcgCGGgUGUGAg -3'
miRNA:   3'- -GCGUCGCGcGCGCa--Ca--GCCgGCACUg -5'
23853 5' -61.7 NC_005261.1 + 122363 0.66 0.651302
Target:  5'- cCGCGGCuCGCGCGgccccaccgCGGCCugggGGCg -3'
miRNA:   3'- -GCGUCGcGCGCGCaca------GCCGGca--CUG- -5'
23853 5' -61.7 NC_005261.1 + 93219 0.66 0.651302
Target:  5'- aGCAGCGCcaGCGCGgcaaaaaagCGGCCGc--- -3'
miRNA:   3'- gCGUCGCG--CGCGCaca------GCCGGCacug -5'
23853 5' -61.7 NC_005261.1 + 102332 0.66 0.651302
Target:  5'- gCGCAGC-CGCGCcaGcUCGGCCGcgucgaaGGCg -3'
miRNA:   3'- -GCGUCGcGCGCGcaC-AGCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 72240 0.66 0.651302
Target:  5'- gGCGGUGCGCGCaaaGUCGa-CGUGAa -3'
miRNA:   3'- gCGUCGCGCGCGca-CAGCcgGCACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.