miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 5' -61.7 NC_005261.1 + 120652 0.67 0.572412
Target:  5'- uGCGGCGCaagGCGCGgg-CGcGCCuGUGAUc -3'
miRNA:   3'- gCGUCGCG---CGCGCacaGC-CGG-CACUG- -5'
23853 5' -61.7 NC_005261.1 + 119058 0.69 0.468481
Target:  5'- cCGCGGC-CGCGCGUGUgCuuUCGUGGCc -3'
miRNA:   3'- -GCGUCGcGCGCGCACA-GccGGCACUG- -5'
23853 5' -61.7 NC_005261.1 + 118933 0.75 0.213383
Target:  5'- gCGCGGCGcCGCGCG-GcUGGCCGcGGCg -3'
miRNA:   3'- -GCGUCGC-GCGCGCaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 118847 0.67 0.592024
Target:  5'- uGCGGCGCggagggcgGCGCGcccgCGGCCcUGGCc -3'
miRNA:   3'- gCGUCGCG--------CGCGCaca-GCCGGcACUG- -5'
23853 5' -61.7 NC_005261.1 + 118583 0.74 0.248058
Target:  5'- gGCGGCGCGCGCcgccGccgcggagcucgcgcUGUCGGCCGUuGCc -3'
miRNA:   3'- gCGUCGCGCGCG----C---------------ACAGCCGGCAcUG- -5'
23853 5' -61.7 NC_005261.1 + 118548 0.72 0.329744
Target:  5'- uGCGGCGCGCGCGaGgacGCCGUGcccGCg -3'
miRNA:   3'- gCGUCGCGCGCGCaCagcCGGCAC---UG- -5'
23853 5' -61.7 NC_005261.1 + 118414 0.68 0.495973
Target:  5'- cCGCAGC-CGCGCuggcUGUCGccGCCGcgGACg -3'
miRNA:   3'- -GCGUCGcGCGCGc---ACAGC--CGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 118373 0.67 0.562663
Target:  5'- gCGCuGGgGCGCGCGgcccgaggcgcUGgCGGCCGcgGGCg -3'
miRNA:   3'- -GCG-UCgCGCGCGC-----------ACaGCCGGCa-CUG- -5'
23853 5' -61.7 NC_005261.1 + 118270 0.67 0.601874
Target:  5'- uGCAcuGCGCGCacuuCGUGaCGGCCGccgcgGGCa -3'
miRNA:   3'- gCGU--CGCGCGc---GCACaGCCGGCa----CUG- -5'
23853 5' -61.7 NC_005261.1 + 118212 0.66 0.611745
Target:  5'- gCGCuGCGCgGgGCGcUGaCGGCCGcGGCc -3'
miRNA:   3'- -GCGuCGCG-CgCGC-ACaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 116159 0.7 0.399304
Target:  5'- aGCAGCGCGCG-GUcgCGGCCGcguccccGACg -3'
miRNA:   3'- gCGUCGCGCGCgCAcaGCCGGCa------CUG- -5'
23853 5' -61.7 NC_005261.1 + 114344 0.68 0.543305
Target:  5'- gGCucgAGCG-GCGCGUGgccgCGGCCGagucggUGGCc -3'
miRNA:   3'- gCG---UCGCgCGCGCACa---GCCGGC------ACUG- -5'
23853 5' -61.7 NC_005261.1 + 113900 0.72 0.295138
Target:  5'- aCGCGGCGgGCGCGa--UGGCCGaGGCa -3'
miRNA:   3'- -GCGUCGCgCGCGCacaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 109326 0.66 0.641416
Target:  5'- cCGCgAGCGCGgcCGCGggGUCGGCgGccGCg -3'
miRNA:   3'- -GCG-UCGCGC--GCGCa-CAGCCGgCacUG- -5'
23853 5' -61.7 NC_005261.1 + 109187 0.68 0.543305
Target:  5'- aGCAGCGC-CGCG--UCGGgCGUGcGCa -3'
miRNA:   3'- gCGUCGCGcGCGCacAGCCgGCAC-UG- -5'
23853 5' -61.7 NC_005261.1 + 108162 0.7 0.424487
Target:  5'- uGCAGCGCGUccgccaggGCGcG-CGGCCGcGGCu -3'
miRNA:   3'- gCGUCGCGCG--------CGCaCaGCCGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 106970 0.67 0.592024
Target:  5'- cCGCcucGGCGCGCGCGccgcgcaccgcGUCGGCCa---- -3'
miRNA:   3'- -GCG---UCGCGCGCGCa----------CAGCCGGcacug -5'
23853 5' -61.7 NC_005261.1 + 106894 0.68 0.52417
Target:  5'- uGCAGCGCcUGCGUcGUCcGcGCCGcGGCg -3'
miRNA:   3'- gCGUCGCGcGCGCA-CAG-C-CGGCaCUG- -5'
23853 5' -61.7 NC_005261.1 + 106119 0.69 0.47756
Target:  5'- uCGcCGGCGCGCGCGcGcCGGCaacgccgGACa -3'
miRNA:   3'- -GC-GUCGCGCGCGCaCaGCCGgca----CUG- -5'
23853 5' -61.7 NC_005261.1 + 106093 0.68 0.543305
Target:  5'- aGCGGCGauCGCGacGUCGGCCGg--- -3'
miRNA:   3'- gCGUCGCgcGCGCa-CAGCCGGCacug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.