miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 3' -51.4 NC_005262.1 + 49212 0.66 0.932386
Target:  5'- gUGUUGUugggugcggugcgcgUGAGCGCCGCGGCg----- -3'
miRNA:   3'- gAUAACA---------------GCUUGCGGUGCCGgaguuc -5'
23859 3' -51.4 NC_005262.1 + 60447 0.66 0.930147
Target:  5'- uCUAg---CGA--GCCGCGGCCUCGu- -3'
miRNA:   3'- -GAUaacaGCUugCGGUGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 50238 0.66 0.930147
Target:  5'- ----aG-CGGAUGCCaagcaacggucGCGGCCUCGAu -3'
miRNA:   3'- gauaaCaGCUUGCGG-----------UGCCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 53078 0.66 0.930147
Target:  5'- --uUUGcggGAGCGCCggccgcgugcgcGCGGCCUCGAu -3'
miRNA:   3'- gauAACag-CUUGCGG------------UGCCGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 503 0.66 0.930147
Target:  5'- ----cGUCG-ACGCCGagccagcagcCGGCCgUCAAGc -3'
miRNA:   3'- gauaaCAGCuUGCGGU----------GCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 52787 0.66 0.918266
Target:  5'- ------cCGAcCGCUACGGCCgcuUCAAGg -3'
miRNA:   3'- gauaacaGCUuGCGGUGCCGG---AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 15300 0.66 0.918266
Target:  5'- ----cGUCGAuuCGCCgcgcaugggcggGCGGCCgUCGAGc -3'
miRNA:   3'- gauaaCAGCUu-GCGG------------UGCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 35621 0.66 0.916385
Target:  5'- -aGUUGUCGAcggcCGCCGCGcgcaguugcgccgcGCgCUCGGGg -3'
miRNA:   3'- gaUAACAGCUu---GCGGUGC--------------CG-GAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 7704 0.66 0.916385
Target:  5'- ---aUGUCGAuCGCCgagaaACGGCCguccgcgaucacguUCAGGa -3'
miRNA:   3'- gauaACAGCUuGCGG-----UGCCGG--------------AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 49636 0.66 0.911897
Target:  5'- -----cUCGGugGCCucgcgaucgGCGGCCUgCAAGg -3'
miRNA:   3'- gauaacAGCUugCGG---------UGCCGGA-GUUC- -5'
23859 3' -51.4 NC_005262.1 + 51905 0.66 0.911897
Target:  5'- --uUUGUCG--UGCCGCGGCCa---- -3'
miRNA:   3'- gauAACAGCuuGCGGUGCCGGaguuc -5'
23859 3' -51.4 NC_005262.1 + 12668 0.66 0.911897
Target:  5'- ----cGUCGAGCGCCuugucgacCGGCgCgUCGAGc -3'
miRNA:   3'- gauaaCAGCUUGCGGu-------GCCG-G-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 29114 0.66 0.911897
Target:  5'- gCUGcgUGUcCGAACGCCagucgggauaGCGGUCgUCGAGc -3'
miRNA:   3'- -GAUa-ACA-GCUUGCGG----------UGCCGG-AGUUC- -5'
23859 3' -51.4 NC_005262.1 + 1440 0.66 0.905246
Target:  5'- ----cGUCGAGCGCaGCGuuucgaauaGCCUCAAa -3'
miRNA:   3'- gauaaCAGCUUGCGgUGC---------CGGAGUUc -5'
23859 3' -51.4 NC_005262.1 + 29445 0.66 0.905246
Target:  5'- uUGUUGUCG---GUCACGGCgUCGAu -3'
miRNA:   3'- gAUAACAGCuugCGGUGCCGgAGUUc -5'
23859 3' -51.4 NC_005262.1 + 9365 0.66 0.905246
Target:  5'- ----gGUCGGcgcGCGCgGCGGCCUg--- -3'
miRNA:   3'- gauaaCAGCU---UGCGgUGCCGGAguuc -5'
23859 3' -51.4 NC_005262.1 + 10176 0.67 0.898314
Target:  5'- ---aUGUCG-ACGCC-CGG-CUCGGGa -3'
miRNA:   3'- gauaACAGCuUGCGGuGCCgGAGUUC- -5'
23859 3' -51.4 NC_005262.1 + 35072 0.67 0.891106
Target:  5'- ----cGUcCGGGCG-CGCGGCCUCGc- -3'
miRNA:   3'- gauaaCA-GCUUGCgGUGCCGGAGUuc -5'
23859 3' -51.4 NC_005262.1 + 27885 0.67 0.883626
Target:  5'- ----aGUCGAGCGCCAucgacacugugcCGGCCcCGu- -3'
miRNA:   3'- gauaaCAGCUUGCGGU------------GCCGGaGUuc -5'
23859 3' -51.4 NC_005262.1 + 41095 0.67 0.883626
Target:  5'- ----cGUC-AACGCCGcCGGCCacgUCGAGa -3'
miRNA:   3'- gauaaCAGcUUGCGGU-GCCGG---AGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.