miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23859 5' -63.2 NC_005262.1 + 59244 0.66 0.36931
Target:  5'- gAGCUgCUGCA-CGCUCaGCaCGCGCAGg -3'
miRNA:   3'- -UCGA-GAUGUgGCGGGgCGgGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 20172 0.66 0.361154
Target:  5'- cAGUUCUGCGCCgGUgCCGgcgagcgucaCCUGCGCGa -3'
miRNA:   3'- -UCGAGAUGUGG-CGgGGC----------GGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 19808 0.66 0.361154
Target:  5'- aAGCgac-CAUCGCCCgCGCgaucaCGCGCAGa -3'
miRNA:   3'- -UCGagauGUGGCGGG-GCGg----GCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 40448 0.66 0.361154
Target:  5'- gGGCUau-CACCGacauCCCGgCCGUGCAu -3'
miRNA:   3'- -UCGAgauGUGGCg---GGGCgGGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 35536 0.66 0.360346
Target:  5'- gGGCUUcgGCcaaGCCGCgaugucgCUCGCCgGCGCGGg -3'
miRNA:   3'- -UCGAGa-UG---UGGCG-------GGGCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 57436 0.66 0.353125
Target:  5'- cGCUCcgGCACCGUCCgCGgaugCCGCGgCGGc -3'
miRNA:   3'- uCGAGa-UGUGGCGGG-GCg---GGCGC-GUC- -5'
23859 5' -63.2 NC_005262.1 + 29881 0.66 0.352329
Target:  5'- gAGCUCgaGCACCGCCgcuaccgaucgggCCGCCgGCcgacGCAc -3'
miRNA:   3'- -UCGAGa-UGUGGCGG-------------GGCGGgCG----CGUc -5'
23859 5' -63.2 NC_005262.1 + 50407 0.66 0.348368
Target:  5'- gAGCUCguggaUGCGCgCGCCCaggcgcaggauuccgUGCUgGCGCAGc -3'
miRNA:   3'- -UCGAG-----AUGUG-GCGGG---------------GCGGgCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 55571 0.66 0.345223
Target:  5'- gAGCUU--CGCCgacaGCUCaugGCCCGCGCGGa -3'
miRNA:   3'- -UCGAGauGUGG----CGGGg--CGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 3077 0.66 0.337449
Target:  5'- aGGUUCUGCGCCGUcaUCgGUuuGcCGCAGu -3'
miRNA:   3'- -UCGAGAUGUGGCG--GGgCGggC-GCGUC- -5'
23859 5' -63.2 NC_005262.1 + 8442 0.66 0.337449
Target:  5'- cGCUCUuguCCGUCUCGUCgaGCGCGGc -3'
miRNA:   3'- uCGAGAuguGGCGGGGCGGg-CGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 43187 0.66 0.337449
Target:  5'- uGGCggauuggCUACGCaacaGCCCUGCggcgcgCCGCGCGc -3'
miRNA:   3'- -UCGa------GAUGUGg---CGGGGCG------GGCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 50857 0.66 0.337449
Target:  5'- uGC-CgucGCGCaCGCCCuucagCGCgCCGCGCAGg -3'
miRNA:   3'- uCGaGa--UGUG-GCGGG-----GCG-GGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 59215 0.66 0.329802
Target:  5'- cGCUC-ACGCCcgagcagcGCCgCCGCUgGCGCGa -3'
miRNA:   3'- uCGAGaUGUGG--------CGG-GGCGGgCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 51204 0.66 0.329802
Target:  5'- cGCUCauccGCGaCGCCUCGCCgGCgGCAGc -3'
miRNA:   3'- uCGAGa---UGUgGCGGGGCGGgCG-CGUC- -5'
23859 5' -63.2 NC_005262.1 + 35758 0.67 0.322285
Target:  5'- aGGaugUUGCGCCaGCUCucggCGCCCGCGUAGa -3'
miRNA:   3'- -UCga-GAUGUGG-CGGG----GCGGGCGCGUC- -5'
23859 5' -63.2 NC_005262.1 + 31493 0.67 0.322285
Target:  5'- cAGCgcacGCGCUGCCUcgacguucgCGCCCGCGCc- -3'
miRNA:   3'- -UCGaga-UGUGGCGGG---------GCGGGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 42271 0.67 0.314896
Target:  5'- cGCgagCUGCACCGCuUCCGUguacUCGCGCu- -3'
miRNA:   3'- uCGa--GAUGUGGCG-GGGCG----GGCGCGuc -5'
23859 5' -63.2 NC_005262.1 + 2382 0.67 0.314896
Target:  5'- -cCUCggcCGCCGCCuUCGCCuCGCGCGc -3'
miRNA:   3'- ucGAGau-GUGGCGG-GGCGG-GCGCGUc -5'
23859 5' -63.2 NC_005262.1 + 42453 0.67 0.310524
Target:  5'- cGGC-CUugGCCGCCUcgaucgccuccuggaCGUgCGCGUAGg -3'
miRNA:   3'- -UCGaGAugUGGCGGG---------------GCGgGCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.