miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 5' -51.6 NC_005262.1 + 46688 0.66 0.917728
Target:  5'- -cGCCGAUGCAgucaGCg--CCGCgcgcgCAGUGg -3'
miRNA:   3'- caUGGUUGCGU----UGauaGGCGa----GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 15491 0.66 0.917728
Target:  5'- -cACCgAGCGCGGCggcUCGCUCAccgGCGa -3'
miRNA:   3'- caUGG-UUGCGUUGauaGGCGAGU---CGC- -5'
23860 5' -51.6 NC_005262.1 + 10400 0.66 0.917728
Target:  5'- cGUGCCGGCGUuguccuugAACgcgGUCUGCggcaGGCGc -3'
miRNA:   3'- -CAUGGUUGCG--------UUGa--UAGGCGag--UCGC- -5'
23860 5' -51.6 NC_005262.1 + 37241 0.66 0.917728
Target:  5'- -aACUGGCGCAGCgcgucggCCGCUUcggAGUGg -3'
miRNA:   3'- caUGGUUGCGUUGaua----GGCGAG---UCGC- -5'
23860 5' -51.6 NC_005262.1 + 35940 0.66 0.917728
Target:  5'- cUACCGugugaACGCGcCUAUCCGCgUGGUGc -3'
miRNA:   3'- cAUGGU-----UGCGUuGAUAGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 61145 0.66 0.917728
Target:  5'- -cGCUGGCGCAGCagaUCGCggCGGCGg -3'
miRNA:   3'- caUGGUUGCGUUGauaGGCGa-GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 33515 0.66 0.917728
Target:  5'- ---aCAGCGCGcucgAUUGcCCGCUCGGCc -3'
miRNA:   3'- caugGUUGCGU----UGAUaGGCGAGUCGc -5'
23860 5' -51.6 NC_005262.1 + 1485 0.66 0.916466
Target:  5'- cUGCCGGCGCugccGCUgcAUCUGCggagggaggcugCGGCGg -3'
miRNA:   3'- cAUGGUUGCGu---UGA--UAGGCGa-----------GUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52904 0.66 0.91583
Target:  5'- -cACCAGCGagGGCgugAUCCGCUCGaucuacgacggccuGCGc -3'
miRNA:   3'- caUGGUUGCg-UUGa--UAGGCGAGU--------------CGC- -5'
23860 5' -51.6 NC_005262.1 + 62172 0.66 0.911301
Target:  5'- -gACCuACGCGAUUAucgaUCUGCUCAaCGa -3'
miRNA:   3'- caUGGuUGCGUUGAU----AGGCGAGUcGC- -5'
23860 5' -51.6 NC_005262.1 + 37279 0.66 0.911301
Target:  5'- -aGCCAcguucaacguGCGCGGCgAUCCGUucaagaUCGGCa -3'
miRNA:   3'- caUGGU----------UGCGUUGaUAGGCG------AGUCGc -5'
23860 5' -51.6 NC_005262.1 + 13826 0.66 0.911301
Target:  5'- -gAUCGAUGCAAUUGaCCauGUUCGGCGa -3'
miRNA:   3'- caUGGUUGCGUUGAUaGG--CGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 15871 0.66 0.911301
Target:  5'- uGUACCucGACGCGAUggcgcugAUCCGCcgCGuGCGc -3'
miRNA:   3'- -CAUGG--UUGCGUUGa------UAGGCGa-GU-CGC- -5'
23860 5' -51.6 NC_005262.1 + 7703 0.66 0.904589
Target:  5'- -cGCCGccuccucgaGCuGCAucuugcGCUGaCCGCUCAGCGu -3'
miRNA:   3'- caUGGU---------UG-CGU------UGAUaGGCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 52392 0.66 0.897594
Target:  5'- --cCCGGCGCGGCg--CgGCuUCGGCGu -3'
miRNA:   3'- cauGGUUGCGUUGauaGgCG-AGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 12843 0.66 0.897594
Target:  5'- -gGCCuGCGuCGGCU-UCaGCUCGGCGg -3'
miRNA:   3'- caUGGuUGC-GUUGAuAGgCGAGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 38682 0.66 0.897594
Target:  5'- -cGCUGACGCAacgauucuuGCUGUgCUGCcCGGCGa -3'
miRNA:   3'- caUGGUUGCGU---------UGAUA-GGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 48072 0.66 0.897594
Target:  5'- -cACCugcCGCGACgagCCGCcCGGCGc -3'
miRNA:   3'- caUGGuu-GCGUUGauaGGCGaGUCGC- -5'
23860 5' -51.6 NC_005262.1 + 22933 0.66 0.897594
Target:  5'- -cGCCGACGCcAUgcUCCGCgCGGgGa -3'
miRNA:   3'- caUGGUUGCGuUGauAGGCGaGUCgC- -5'
23860 5' -51.6 NC_005262.1 + 42713 0.66 0.89032
Target:  5'- cGUGCUGACGauggauuaCAACaucGUCgCGCUCGGCGc -3'
miRNA:   3'- -CAUGGUUGC--------GUUGa--UAG-GCGAGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.