miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 3' -54 NC_005262.1 + 23003 0.65 0.821711
Target:  5'- -gCugGCcGUGCGgcaugaaugcggcUUCCGCguggaguucaucgaCGCAGCCg -3'
miRNA:   3'- aaGugCGuUAUGC-------------AAGGCG--------------GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 58190 0.66 0.816117
Target:  5'- gUCGCGaacauCGacgCCGCCGCGGUg -3'
miRNA:   3'- aAGUGCguuauGCaa-GGCGGCGUCGg -5'
23861 3' -54 NC_005262.1 + 15310 0.66 0.816117
Target:  5'- -cCGCGCAuggGCGggCgGCCGUcgAGCa -3'
miRNA:   3'- aaGUGCGUua-UGCaaGgCGGCG--UCGg -5'
23861 3' -54 NC_005262.1 + 11565 0.66 0.816117
Target:  5'- aUCACGCGcgcUGCuaugCCgGCgGCGGCCa -3'
miRNA:   3'- aAGUGCGUu--AUGcaa-GG-CGgCGUCGG- -5'
23861 3' -54 NC_005262.1 + 13418 0.66 0.813293
Target:  5'- gUUCGCGUcgccacggucgacgAAUGCG--CCGCuCGCGGUCg -3'
miRNA:   3'- -AAGUGCG--------------UUAUGCaaGGCG-GCGUCGG- -5'
23861 3' -54 NC_005262.1 + 57699 0.66 0.806637
Target:  5'- gUUC-CGCAacGUGCGgaucaCCgagaagaagGCCGCGGCCu -3'
miRNA:   3'- -AAGuGCGU--UAUGCaa---GG---------CGGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 32907 0.66 0.806637
Target:  5'- --aGCGCGAgcgGCGUcaccaUCCgGCCGCcggcgacuccucGGCCg -3'
miRNA:   3'- aagUGCGUUa--UGCA-----AGG-CGGCG------------UCGG- -5'
23861 3' -54 NC_005262.1 + 40379 0.66 0.806637
Target:  5'- aUgACGCGgcucAUGCugcCCGCCGCAucGCCg -3'
miRNA:   3'- aAgUGCGU----UAUGcaaGGCGGCGU--CGG- -5'
23861 3' -54 NC_005262.1 + 25742 0.66 0.806637
Target:  5'- aUCGCGCAGgcCGgcaaGCCGCucacGGCCc -3'
miRNA:   3'- aAGUGCGUUauGCaaggCGGCG----UCGG- -5'
23861 3' -54 NC_005262.1 + 22898 0.66 0.80086
Target:  5'- --gGCGUAGUACGguggUCgguucucgugugcggUGCCGCuGCCg -3'
miRNA:   3'- aagUGCGUUAUGCa---AG---------------GCGGCGuCGG- -5'
23861 3' -54 NC_005262.1 + 25113 0.66 0.796972
Target:  5'- -gCACaGCAAgaauCGUUgCGUCaGCGGCCa -3'
miRNA:   3'- aaGUG-CGUUau--GCAAgGCGG-CGUCGG- -5'
23861 3' -54 NC_005262.1 + 30765 0.66 0.796972
Target:  5'- gUCGgGCGGUACGUcagcaUCaGgCGCAGCUu -3'
miRNA:   3'- aAGUgCGUUAUGCA-----AGgCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 24977 0.66 0.796972
Target:  5'- -gCACGCGAgacggucaGCGUaUCCGuuGCucgcGCCg -3'
miRNA:   3'- aaGUGCGUUa-------UGCA-AGGCggCGu---CGG- -5'
23861 3' -54 NC_005262.1 + 49455 0.66 0.796972
Target:  5'- -gCGCGCAAgcACGUcgcaacUUCGCCGCccAGCUc -3'
miRNA:   3'- aaGUGCGUUa-UGCA------AGGCGGCG--UCGG- -5'
23861 3' -54 NC_005262.1 + 258 0.66 0.791089
Target:  5'- uUUCGCGCGG-ACGUacacgcgcugagugCCGCUGCugagacGGCCa -3'
miRNA:   3'- -AAGUGCGUUaUGCAa-------------GGCGGCG------UCGG- -5'
23861 3' -54 NC_005262.1 + 12398 0.66 0.787132
Target:  5'- -gCACGCGGUGCacacggUCaGgCGCGGCCu -3'
miRNA:   3'- aaGUGCGUUAUGca----AGgCgGCGUCGG- -5'
23861 3' -54 NC_005262.1 + 30520 0.66 0.787132
Target:  5'- -gCGCGCGAUGCGguaCGCCucGCGGaUCg -3'
miRNA:   3'- aaGUGCGUUAUGCaagGCGG--CGUC-GG- -5'
23861 3' -54 NC_005262.1 + 17145 0.66 0.787132
Target:  5'- --gGCGCcAUGCug-CCGCUGuCGGCCa -3'
miRNA:   3'- aagUGCGuUAUGcaaGGCGGC-GUCGG- -5'
23861 3' -54 NC_005262.1 + 24740 0.66 0.784148
Target:  5'- -gCGCGCGAUcgGCGUgcggCCGaaguggauucagcaCCGCGGCg -3'
miRNA:   3'- aaGUGCGUUA--UGCAa---GGC--------------GGCGUCGg -5'
23861 3' -54 NC_005262.1 + 54422 0.66 0.777129
Target:  5'- cUCGCGgAG-GCGcaggCCGCCGCGcgcGCCg -3'
miRNA:   3'- aAGUGCgUUaUGCaa--GGCGGCGU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.