miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 5' -54.3 NC_005262.1 + 52002 0.66 0.824096
Target:  5'- uGCagcCACCUugugaggguagaggaGCGCGcCCAGGuCGGGCc -3'
miRNA:   3'- cCGaa-GUGGA---------------UGCGCuGGUUC-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 10231 0.66 0.820435
Target:  5'- cGGUcagCGCgUGCGCG-CCGAGCAccaucucggGGUa -3'
miRNA:   3'- -CCGaa-GUGgAUGCGCuGGUUCGU---------CCG- -5'
23862 5' -54.3 NC_005262.1 + 2961 0.66 0.820435
Target:  5'- gGGCgggCACUcACGCuGCCcGGCAucgGGCa -3'
miRNA:   3'- -CCGaa-GUGGaUGCGcUGGuUCGU---CCG- -5'
23862 5' -54.3 NC_005262.1 + 19957 0.66 0.820435
Target:  5'- cGGCcacCGCCgcGCGCGGCCGGcccGC-GGCc -3'
miRNA:   3'- -CCGaa-GUGGa-UGCGCUGGUU---CGuCCG- -5'
23862 5' -54.3 NC_005262.1 + 3822 0.66 0.820435
Target:  5'- cGGgUgCAUgcGCGCcuGAUCGAGCGGGCg -3'
miRNA:   3'- -CCgAaGUGgaUGCG--CUGGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 38904 0.66 0.819515
Target:  5'- cGGCUggccgagcUCGCCUucacGCGcCGgcggaugcacaucGCCGAGCAcuGGCg -3'
miRNA:   3'- -CCGA--------AGUGGA----UGC-GC-------------UGGUUCGU--CCG- -5'
23862 5' -54.3 NC_005262.1 + 61326 0.66 0.814885
Target:  5'- cGCggCACC-ACGCGcaugcucaacguccACCGuaagaccggcgaguGGCAGGCa -3'
miRNA:   3'- cCGaaGUGGaUGCGC--------------UGGU--------------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 36137 0.66 0.811147
Target:  5'- aGGCgagCACCgccaGCGCGAUCGaccagcucgAGCAGa- -3'
miRNA:   3'- -CCGaa-GUGGa---UGCGCUGGU---------UCGUCcg -5'
23862 5' -54.3 NC_005262.1 + 22667 0.66 0.811147
Target:  5'- uGGCUUCAgg-GCGCGgACCAGugcGCAGacGCg -3'
miRNA:   3'- -CCGAAGUggaUGCGC-UGGUU---CGUC--CG- -5'
23862 5' -54.3 NC_005262.1 + 41636 0.66 0.811147
Target:  5'- -cCUUCGCCUccaGCuCGGCgAuGCGGGCa -3'
miRNA:   3'- ccGAAGUGGA---UGcGCUGgUuCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 43670 0.66 0.811147
Target:  5'- uGGCg--ACCUgaACGCaaGCCAAGcCGGGCc -3'
miRNA:   3'- -CCGaagUGGA--UGCGc-UGGUUC-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 29073 0.66 0.811147
Target:  5'- cGGCUcgACCUGCGUGaACCAcuucGGCugcccGGUc -3'
miRNA:   3'- -CCGAagUGGAUGCGC-UGGU----UCGu----CCG- -5'
23862 5' -54.3 NC_005262.1 + 62963 0.66 0.811147
Target:  5'- cGCUUCcgGCCgacACGCGGCUcuauCAGGCc -3'
miRNA:   3'- cCGAAG--UGGa--UGCGCUGGuuc-GUCCG- -5'
23862 5' -54.3 NC_005262.1 + 57477 0.66 0.811147
Target:  5'- cGGCgggCGCCgacgagAgGCGGCCGgcgAGCgcaagaAGGCg -3'
miRNA:   3'- -CCGaa-GUGGa-----UgCGCUGGU---UCG------UCCG- -5'
23862 5' -54.3 NC_005262.1 + 60633 0.66 0.811147
Target:  5'- uGGCg--ACCUGCGCaugcGCCAGaaAGGCa -3'
miRNA:   3'- -CCGaagUGGAUGCGc---UGGUUcgUCCG- -5'
23862 5' -54.3 NC_005262.1 + 21227 0.66 0.810208
Target:  5'- aGUUUCuugucgACCUgaacggcacgaagGCgGCGAuCCGAGCGGGCu -3'
miRNA:   3'- cCGAAG------UGGA-------------UG-CGCU-GGUUCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 17066 0.66 0.810208
Target:  5'- cGCgcacggCGCCgauagGCGCGcCCGucgacgcGGCGGGCc -3'
miRNA:   3'- cCGaa----GUGGa----UGCGCuGGU-------UCGUCCG- -5'
23862 5' -54.3 NC_005262.1 + 42421 0.66 0.801672
Target:  5'- aGGCggCGCCaGC-CGGCCGcaacaucacgaAGCAGcGCa -3'
miRNA:   3'- -CCGaaGUGGaUGcGCUGGU-----------UCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 5078 0.66 0.801672
Target:  5'- cGGCggCGCgUGCGacCGGCUcGGCGGuGCg -3'
miRNA:   3'- -CCGaaGUGgAUGC--GCUGGuUCGUC-CG- -5'
23862 5' -54.3 NC_005262.1 + 44293 0.66 0.801672
Target:  5'- aGCgUUCGCCUACcCGuucauCCAGuGCGGGUu -3'
miRNA:   3'- cCG-AAGUGGAUGcGCu----GGUU-CGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.