miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 12445 0.66 0.580958
Target:  5'- gGCgCGgUGCCGagcuGCAUGGCGgauucgaucuUGCCGCGc -3'
miRNA:   3'- -UG-GUgACGGU----UGUGCCGU----------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 57412 0.66 0.580958
Target:  5'- gACCGCcgagaaggcgGCCGACAacgcucCGGCAccguccgcggaUGCCGCGg -3'
miRNA:   3'- -UGGUGa---------CGGUUGU------GCCGU-----------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 24195 0.66 0.580958
Target:  5'- uUCAC-GcCCGAgGCGGCA-GCCGCGa -3'
miRNA:   3'- uGGUGaC-GGUUgUGCCGUaCGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 35824 0.66 0.580958
Target:  5'- cAUCAUggGCCGGaGCGGCGUcggcGCCGCGa -3'
miRNA:   3'- -UGGUGa-CGGUUgUGCCGUA----CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 22124 0.66 0.579872
Target:  5'- uGCCGgUGCCGGCggcgaugACGGC--GCCGCc- -3'
miRNA:   3'- -UGGUgACGGUUG-------UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 46237 0.66 0.570123
Target:  5'- uUCGCgcGCCGcCGCGGC-UGCCGCc- -3'
miRNA:   3'- uGGUGa-CGGUuGUGCCGuACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 10085 0.66 0.570123
Target:  5'- cGCCACgGCCuucGACGCGGCcgGguuCUGCGc -3'
miRNA:   3'- -UGGUGaCGG---UUGUGCCGuaC---GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 42440 0.66 0.570123
Target:  5'- cGCuCGCUGC--GCGCGGCcuugGCCGCc- -3'
miRNA:   3'- -UG-GUGACGguUGUGCCGua--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 48440 0.66 0.570123
Target:  5'- gGCgGCaUGaCCAcGCGCGcGUAUGCCGCGc -3'
miRNA:   3'- -UGgUG-AC-GGU-UGUGC-CGUACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 17328 0.66 0.563646
Target:  5'- gGCUGCgucgugGCCGGCGCGGCAUucggguccggcgcggGCgGCGc -3'
miRNA:   3'- -UGGUGa-----CGGUUGUGCCGUA---------------CGgCGUa -5'
23863 5' -57.8 NC_005262.1 + 46442 0.66 0.559339
Target:  5'- cGCCGCgccGCCcGCGcCGGacccgaAUGCCGCGc -3'
miRNA:   3'- -UGGUGa--CGGuUGU-GCCg-----UACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 60501 0.66 0.548613
Target:  5'- cGCCGg-GCC-GCGCGGCGcagGCCGCc- -3'
miRNA:   3'- -UGGUgaCGGuUGUGCCGUa--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 19101 0.66 0.537951
Target:  5'- aGCCAC-GCCGucaccaACGGCuUGUCGCGg -3'
miRNA:   3'- -UGGUGaCGGUug----UGCCGuACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 40387 0.66 0.537951
Target:  5'- gGCCuguCUGCCGcguucGCGCGGauucaGCCGCGc -3'
miRNA:   3'- -UGGu--GACGGU-----UGUGCCgua--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 1137 0.66 0.537951
Target:  5'- gGCCGCUGCgGGCuuCGauGC-UGCCGCGc -3'
miRNA:   3'- -UGGUGACGgUUGu-GC--CGuACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 59121 0.66 0.537951
Target:  5'- uACCGCgccgagGCgAAC-CGGCcggGCCGCGUc -3'
miRNA:   3'- -UGGUGa-----CGgUUGuGCCGua-CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 63624 0.66 0.536889
Target:  5'- cGCUGCUGUaCGACAUGGCAaaaagcaUGUCGCu- -3'
miRNA:   3'- -UGGUGACG-GUUGUGCCGU-------ACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 22234 0.66 0.527362
Target:  5'- gGCCGCgccGCCcACGcCGGCcgGCCuGCGc -3'
miRNA:   3'- -UGGUGa--CGGuUGU-GCCGuaCGG-CGUa -5'
23863 5' -57.8 NC_005262.1 + 30134 0.66 0.527362
Target:  5'- uGCCGCUGCUggucgccgaAGCGcCGGCGgaUGCCGaCGc -3'
miRNA:   3'- -UGGUGACGG---------UUGU-GCCGU--ACGGC-GUa -5'
23863 5' -57.8 NC_005262.1 + 27155 0.66 0.527362
Target:  5'- uACUGgUGCCGGCACa-CcgGCCGCAUg -3'
miRNA:   3'- -UGGUgACGGUUGUGccGuaCGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.