miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23864 5' -53.6 NC_005262.1 + 46803 0.66 0.833201
Target:  5'- cGAgcgcGCGCUcGGCCGGcgGCAgCAGgGCAa -3'
miRNA:   3'- aCUa---CGCGA-CUGGCUa-CGU-GUUgCGU- -5'
23864 5' -53.6 NC_005262.1 + 41465 0.66 0.833201
Target:  5'- ----aCGCUGACCgcagcccaGAUGC-CGGCGCAc -3'
miRNA:   3'- acuacGCGACUGG--------CUACGuGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 57613 0.66 0.833201
Target:  5'- ---cGCGCcuaUGACCGcgagGCGCAggaGCGCGu -3'
miRNA:   3'- acuaCGCG---ACUGGCua--CGUGU---UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 1695 0.66 0.833201
Target:  5'- cGAcGCGgUuGCCGcgGCGgCGACGCAu -3'
miRNA:   3'- aCUaCGCgAcUGGCuaCGU-GUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 61778 0.66 0.830477
Target:  5'- ---cGCGCcGACCGaccagcgcguuuucGccUGCGCGGCGCAu -3'
miRNA:   3'- acuaCGCGaCUGGC--------------U--ACGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 60476 0.66 0.824971
Target:  5'- aUGAcgcUGCGCgaucagggcgagacGCCGGgccGCGCGGCGCAg -3'
miRNA:   3'- -ACU---ACGCGac------------UGGCUa--CGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 54427 0.66 0.824046
Target:  5'- gGAgGCGCaGGCCGccGCGC-GCGCc -3'
miRNA:   3'- aCUaCGCGaCUGGCuaCGUGuUGCGu -5'
23864 5' -53.6 NC_005262.1 + 45655 0.66 0.824046
Target:  5'- ---cGCGCUcccGGuuGAgGCGCAGCGCu -3'
miRNA:   3'- acuaCGCGA---CUggCUaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 47073 0.66 0.824046
Target:  5'- ---cGUGCUGcCCGGUGCGCAcagGgGUAu -3'
miRNA:   3'- acuaCGCGACuGGCUACGUGU---UgCGU- -5'
23864 5' -53.6 NC_005262.1 + 29228 0.66 0.814685
Target:  5'- aGAUcGCGCUGA-CGAUGCuCGACcuGCu -3'
miRNA:   3'- aCUA-CGCGACUgGCUACGuGUUG--CGu -5'
23864 5' -53.6 NC_005262.1 + 2910 0.66 0.814685
Target:  5'- cGGUGCGCacGGCCGAcuucaucGCGCuuucgccGCGCAu -3'
miRNA:   3'- aCUACGCGa-CUGGCUa------CGUGu------UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 48190 0.66 0.814685
Target:  5'- cGAUGCGCUccuGCCGcacGCGCuccucGCGCGc -3'
miRNA:   3'- aCUACGCGAc--UGGCua-CGUGu----UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 54180 0.66 0.808974
Target:  5'- uUGAUGUGCcacgGaaagcgcaugaaagcGCCGuUGCACAcgGCGCAg -3'
miRNA:   3'- -ACUACGCGa---C---------------UGGCuACGUGU--UGCGU- -5'
23864 5' -53.6 NC_005262.1 + 36317 0.66 0.805128
Target:  5'- cGGUGgGg-GGCCGGUGCGCu-CGCc -3'
miRNA:   3'- aCUACgCgaCUGGCUACGUGuuGCGu -5'
23864 5' -53.6 NC_005262.1 + 16353 0.66 0.805128
Target:  5'- cGgcGCGCUGAUCGgcGC-CGcCGCGu -3'
miRNA:   3'- aCuaCGCGACUGGCuaCGuGUuGCGU- -5'
23864 5' -53.6 NC_005262.1 + 12760 0.66 0.805128
Target:  5'- aUGAUGUGCccgucguucGACaCGAU-CACGGCGCGg -3'
miRNA:   3'- -ACUACGCGa--------CUG-GCUAcGUGUUGCGU- -5'
23864 5' -53.6 NC_005262.1 + 60620 0.66 0.805128
Target:  5'- aGAUGCGCgcGAUUGGcgaccUGCGCAuGCGCc -3'
miRNA:   3'- aCUACGCGa-CUGGCU-----ACGUGU-UGCGu -5'
23864 5' -53.6 NC_005262.1 + 43669 0.66 0.795385
Target:  5'- cUGGUGCGUcGGCaGggGCAUGACGUg -3'
miRNA:   3'- -ACUACGCGaCUGgCuaCGUGUUGCGu -5'
23864 5' -53.6 NC_005262.1 + 58148 0.66 0.795385
Target:  5'- aUGGUGCGC-GGCauccucaaggUGAUGCGCAACucggGCGa -3'
miRNA:   3'- -ACUACGCGaCUG----------GCUACGUGUUG----CGU- -5'
23864 5' -53.6 NC_005262.1 + 40722 0.66 0.785467
Target:  5'- gGcgGCGCUGACgcccuCGAgcacggGCGgCGGCGCGu -3'
miRNA:   3'- aCuaCGCGACUG-----GCUa-----CGU-GUUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.