miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23865 3' -54 NC_005262.1 + 21117 0.66 0.856328
Target:  5'- gGCCACGCGugcgGGCGccACgGCUCg--Ca -3'
miRNA:   3'- -CGGUGCGCua--CUGC--UGgCGAGauaGc -5'
23865 3' -54 NC_005262.1 + 41180 0.66 0.855504
Target:  5'- aCCGcCGCGAUcgcgugcgcgcccGGCGACCGCU---UCGa -3'
miRNA:   3'- cGGU-GCGCUA-------------CUGCUGGCGAgauAGC- -5'
23865 3' -54 NC_005262.1 + 40415 0.66 0.851348
Target:  5'- aGCCGCGCGucGGCGACCugaaaaucuggacggGggCUAUCa -3'
miRNA:   3'- -CGGUGCGCuaCUGCUGG---------------CgaGAUAGc -5'
23865 3' -54 NC_005262.1 + 4104 0.66 0.847983
Target:  5'- cGCC-CGCG-UGGCGGCaCGC-CgAUCGu -3'
miRNA:   3'- -CGGuGCGCuACUGCUG-GCGaGaUAGC- -5'
23865 3' -54 NC_005262.1 + 28707 0.66 0.847136
Target:  5'- cGCCACGCagcagcgaguuGAUGACG-UUGUUCUcgguguaGUCGg -3'
miRNA:   3'- -CGGUGCG-----------CUACUGCuGGCGAGA-------UAGC- -5'
23865 3' -54 NC_005262.1 + 5079 0.66 0.839416
Target:  5'- gGCgGCGCGu--GCGACCgGCUCgg-CGg -3'
miRNA:   3'- -CGgUGCGCuacUGCUGG-CGAGauaGC- -5'
23865 3' -54 NC_005262.1 + 53266 0.66 0.839416
Target:  5'- aCCGCGUGAaaccgGGCGGCaUGCUCguguUCGu -3'
miRNA:   3'- cGGUGCGCUa----CUGCUG-GCGAGau--AGC- -5'
23865 3' -54 NC_005262.1 + 38443 0.66 0.839416
Target:  5'- aUCACGCcgGAcGACGGCaCGCUC-GUCGc -3'
miRNA:   3'- cGGUGCG--CUaCUGCUG-GCGAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 738 0.66 0.830638
Target:  5'- cGCC-CGCGAUGACGuGCCgGCgcaugCUGg-- -3'
miRNA:   3'- -CGGuGCGCUACUGC-UGG-CGa----GAUagc -5'
23865 3' -54 NC_005262.1 + 40443 0.66 0.830638
Target:  5'- cGCCGCGCGcuucacGcCGGCCGUg--GUCGa -3'
miRNA:   3'- -CGGUGCGCua----CuGCUGGCGagaUAGC- -5'
23865 3' -54 NC_005262.1 + 51471 0.66 0.830638
Target:  5'- cGCCGCGCGcUGcggcACGAgCCGCaugCcGUCGa -3'
miRNA:   3'- -CGGUGCGCuAC----UGCU-GGCGa--GaUAGC- -5'
23865 3' -54 NC_005262.1 + 34208 0.66 0.830638
Target:  5'- cGCC-CGCGAUcgcggcuucgGGCGACaCGCUCg---- -3'
miRNA:   3'- -CGGuGCGCUA----------CUGCUG-GCGAGauagc -5'
23865 3' -54 NC_005262.1 + 1202 0.66 0.830638
Target:  5'- cGCCGCGCGAUucuuCGAUCGaUUC-GUCGc -3'
miRNA:   3'- -CGGUGCGCUAcu--GCUGGC-GAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 17175 0.66 0.825272
Target:  5'- gGCCGCGCGcgagGacGCGACCGCguucagcaaggccgUUAUCa -3'
miRNA:   3'- -CGGUGCGCua--C--UGCUGGCGa-------------GAUAGc -5'
23865 3' -54 NC_005262.1 + 3844 0.66 0.821655
Target:  5'- cCCGCGCG-UGACGuGCCGCUg----- -3'
miRNA:   3'- cGGUGCGCuACUGC-UGGCGAgauagc -5'
23865 3' -54 NC_005262.1 + 20743 0.67 0.812479
Target:  5'- cGgCGCGCGGUGcCGGCCGg---GUCGa -3'
miRNA:   3'- -CgGUGCGCUACuGCUGGCgagaUAGC- -5'
23865 3' -54 NC_005262.1 + 46757 0.67 0.812479
Target:  5'- cGCCACGcCGGUcguacaggcGGCGACgCGCggUAUCa -3'
miRNA:   3'- -CGGUGC-GCUA---------CUGCUG-GCGagAUAGc -5'
23865 3' -54 NC_005262.1 + 42444 0.67 0.812479
Target:  5'- cGCUGCGCGcgGccuUGGCCGcCUCgAUCGc -3'
miRNA:   3'- -CGGUGCGCuaCu--GCUGGC-GAGaUAGC- -5'
23865 3' -54 NC_005262.1 + 28571 0.67 0.812479
Target:  5'- cGCCGCGCGcgcGACGGCaUGCcCUA-CGg -3'
miRNA:   3'- -CGGUGCGCua-CUGCUG-GCGaGAUaGC- -5'
23865 3' -54 NC_005262.1 + 37586 0.67 0.803118
Target:  5'- aCCA-GCGucaAUGGuuCGACCGCcUCUGUCGa -3'
miRNA:   3'- cGGUgCGC---UACU--GCUGGCG-AGAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.