Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23869 | 5' | -57.7 | NC_005262.1 | + | 34494 | 0.66 | 0.673854 |
Target: 5'- uCCGcGCGGCGGCgcgcgacuucUGCGAG-ACGACgCGg -3' miRNA: 3'- cGGU-CGCUGCCG----------GCGCUCaUGUUG-GC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 11180 | 0.66 | 0.673854 |
Target: 5'- cGCCGaCGACGccGCCGUGAucGUGCGcGCCa -3' miRNA: 3'- -CGGUcGCUGC--CGGCGCU--CAUGU-UGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 19385 | 0.66 | 0.673854 |
Target: 5'- cGCCAucGUGuGCGGCgCGCGGGUGguAUCc -3' miRNA: 3'- -CGGU--CGC-UGCCG-GCGCUCAUguUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 36825 | 0.66 | 0.673854 |
Target: 5'- aCUGGCG-CGGuuGCGAcGUAUgguGCCGa -3' miRNA: 3'- cGGUCGCuGCCggCGCU-CAUGu--UGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 39233 | 0.66 | 0.672798 |
Target: 5'- -aCGGCGACGGaCGCGAucaGCAggaucacGCCGg -3' miRNA: 3'- cgGUCGCUGCCgGCGCUca-UGU-------UGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 23356 | 0.66 | 0.663278 |
Target: 5'- gGCCGGCGugaagcgcGCGGCgGCGaAGgcccGCAACg- -3' miRNA: 3'- -CGGUCGC--------UGCCGgCGC-UCa---UGUUGgc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 12429 | 0.66 | 0.663278 |
Target: 5'- gGCCGGCGucGCGGaCgGCGcGGUGCcgAGCUGc -3' miRNA: 3'- -CGGUCGC--UGCC-GgCGC-UCAUG--UUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 45951 | 0.66 | 0.662218 |
Target: 5'- aGCUGuCGACGGCCGCGuuuccaucucgccAGUu--GCCGg -3' miRNA: 3'- -CGGUcGCUGCCGGCGC-------------UCAuguUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 27476 | 0.66 | 0.652674 |
Target: 5'- uGCCGGCGAgcgcacCGGCCccccacCGAaGU-CGACCGa -3' miRNA: 3'- -CGGUCGCU------GCCGGc-----GCU-CAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 19102 | 0.66 | 0.649489 |
Target: 5'- cGCgCGGCGAugccacguucggauCGGgCGCGGGcGCGucGCCGg -3' miRNA: 3'- -CG-GUCGCU--------------GCCgGCGCUCaUGU--UGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 13509 | 0.66 | 0.648427 |
Target: 5'- gGCgaaGGCGGCGGCaugagauacggaaGCGuGUGCAGCgGc -3' miRNA: 3'- -CGg--UCGCUGCCGg------------CGCuCAUGUUGgC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 8954 | 0.66 | 0.642053 |
Target: 5'- aGCCGGuCGGCGcGCUGCGuGU-CGGuCCa -3' miRNA: 3'- -CGGUC-GCUGC-CGGCGCuCAuGUU-GGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 41664 | 0.66 | 0.642053 |
Target: 5'- aGCC-GCGGCGGCCaGaCGAuUGcCGGCCa -3' miRNA: 3'- -CGGuCGCUGCCGG-C-GCUcAU-GUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 3177 | 0.66 | 0.642053 |
Target: 5'- cGCCAGCGuGCGcauggcguucGCCGUGcccuGUAUcGCCGg -3' miRNA: 3'- -CGGUCGC-UGC----------CGGCGCu---CAUGuUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 17339 | 0.66 | 0.642053 |
Target: 5'- gGCCGGCG-CGGCauuCGGGUcCGGCgCGg -3' miRNA: 3'- -CGGUCGCuGCCGgc-GCUCAuGUUG-GC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 51501 | 0.66 | 0.642053 |
Target: 5'- uCgAGCGGauCGGCCGCaacggcGAG-ACGACCGu -3' miRNA: 3'- cGgUCGCU--GCCGGCG------CUCaUGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 39221 | 0.66 | 0.642053 |
Target: 5'- gGCCAGCaagcaGGCGGCCGgGAau-UAugCGa -3' miRNA: 3'- -CGGUCG-----CUGCCGGCgCUcauGUugGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 3246 | 0.66 | 0.64099 |
Target: 5'- cGCCGGCGucagcgugcccuuGCGGUCGa-AGU-CGACCGu -3' miRNA: 3'- -CGGUCGC-------------UGCCGGCgcUCAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 21422 | 0.66 | 0.631423 |
Target: 5'- aGCUcGCGACGGCCGaCGuccGCgAGCUGg -3' miRNA: 3'- -CGGuCGCUGCCGGC-GCucaUG-UUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 32018 | 0.66 | 0.631423 |
Target: 5'- gGCC-GUGGaaaaGGCCGCGAuGaUGCAgGCCGa -3' miRNA: 3'- -CGGuCGCUg---CCGGCGCU-C-AUGU-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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