miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 19385 0.66 0.673854
Target:  5'- cGCCAucGUGuGCGGCgCGCGGGUGguAUCc -3'
miRNA:   3'- -CGGU--CGC-UGCCG-GCGCUCAUguUGGc -5'
23869 5' -57.7 NC_005262.1 + 36825 0.66 0.673854
Target:  5'- aCUGGCG-CGGuuGCGAcGUAUgguGCCGa -3'
miRNA:   3'- cGGUCGCuGCCggCGCU-CAUGu--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 11180 0.66 0.673854
Target:  5'- cGCCGaCGACGccGCCGUGAucGUGCGcGCCa -3'
miRNA:   3'- -CGGUcGCUGC--CGGCGCU--CAUGU-UGGc -5'
23869 5' -57.7 NC_005262.1 + 34494 0.66 0.673854
Target:  5'- uCCGcGCGGCGGCgcgcgacuucUGCGAG-ACGACgCGg -3'
miRNA:   3'- cGGU-CGCUGCCG----------GCGCUCaUGUUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 39233 0.66 0.672798
Target:  5'- -aCGGCGACGGaCGCGAucaGCAggaucacGCCGg -3'
miRNA:   3'- cgGUCGCUGCCgGCGCUca-UGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 23356 0.66 0.663278
Target:  5'- gGCCGGCGugaagcgcGCGGCgGCGaAGgcccGCAACg- -3'
miRNA:   3'- -CGGUCGC--------UGCCGgCGC-UCa---UGUUGgc -5'
23869 5' -57.7 NC_005262.1 + 12429 0.66 0.663278
Target:  5'- gGCCGGCGucGCGGaCgGCGcGGUGCcgAGCUGc -3'
miRNA:   3'- -CGGUCGC--UGCC-GgCGC-UCAUG--UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 45951 0.66 0.662218
Target:  5'- aGCUGuCGACGGCCGCGuuuccaucucgccAGUu--GCCGg -3'
miRNA:   3'- -CGGUcGCUGCCGGCGC-------------UCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 27476 0.66 0.652674
Target:  5'- uGCCGGCGAgcgcacCGGCCccccacCGAaGU-CGACCGa -3'
miRNA:   3'- -CGGUCGCU------GCCGGc-----GCU-CAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 19102 0.66 0.649489
Target:  5'- cGCgCGGCGAugccacguucggauCGGgCGCGGGcGCGucGCCGg -3'
miRNA:   3'- -CG-GUCGCU--------------GCCgGCGCUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 13509 0.66 0.648427
Target:  5'- gGCgaaGGCGGCGGCaugagauacggaaGCGuGUGCAGCgGc -3'
miRNA:   3'- -CGg--UCGCUGCCGg------------CGCuCAUGUUGgC- -5'
23869 5' -57.7 NC_005262.1 + 17339 0.66 0.642053
Target:  5'- gGCCGGCG-CGGCauuCGGGUcCGGCgCGg -3'
miRNA:   3'- -CGGUCGCuGCCGgc-GCUCAuGUUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 8954 0.66 0.642053
Target:  5'- aGCCGGuCGGCGcGCUGCGuGU-CGGuCCa -3'
miRNA:   3'- -CGGUC-GCUGC-CGGCGCuCAuGUU-GGc -5'
23869 5' -57.7 NC_005262.1 + 41664 0.66 0.642053
Target:  5'- aGCC-GCGGCGGCCaGaCGAuUGcCGGCCa -3'
miRNA:   3'- -CGGuCGCUGCCGG-C-GCUcAU-GUUGGc -5'
23869 5' -57.7 NC_005262.1 + 39221 0.66 0.642053
Target:  5'- gGCCAGCaagcaGGCGGCCGgGAau-UAugCGa -3'
miRNA:   3'- -CGGUCG-----CUGCCGGCgCUcauGUugGC- -5'
23869 5' -57.7 NC_005262.1 + 51501 0.66 0.642053
Target:  5'- uCgAGCGGauCGGCCGCaacggcGAG-ACGACCGu -3'
miRNA:   3'- cGgUCGCU--GCCGGCG------CUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 3177 0.66 0.642053
Target:  5'- cGCCAGCGuGCGcauggcguucGCCGUGcccuGUAUcGCCGg -3'
miRNA:   3'- -CGGUCGC-UGC----------CGGCGCu---CAUGuUGGC- -5'
23869 5' -57.7 NC_005262.1 + 3246 0.66 0.64099
Target:  5'- cGCCGGCGucagcgugcccuuGCGGUCGa-AGU-CGACCGu -3'
miRNA:   3'- -CGGUCGC-------------UGCCGGCgcUCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 21422 0.66 0.631423
Target:  5'- aGCUcGCGACGGCCGaCGuccGCgAGCUGg -3'
miRNA:   3'- -CGGuCGCUGCCGGC-GCucaUG-UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 32018 0.66 0.631423
Target:  5'- gGCC-GUGGaaaaGGCCGCGAuGaUGCAgGCCGa -3'
miRNA:   3'- -CGGuCGCUg---CCGGCGCU-C-AUGU-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.