miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 53488 0.67 0.578453
Target:  5'- gGCuCGGC-ACGGCCGa-AGUGCAgacGCCGc -3'
miRNA:   3'- -CG-GUCGcUGCCGGCgcUCAUGU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 53085 0.67 0.578453
Target:  5'- --gAGCGcCGGCCGCGuGcgcGCGGCCu -3'
miRNA:   3'- cggUCGCuGCCGGCGCuCa--UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 53037 0.68 0.536769
Target:  5'- aGCCAGUacACGGgCGUGgAGUACGACgCGc -3'
miRNA:   3'- -CGGUCGc-UGCCgGCGC-UCAUGUUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 52715 0.67 0.578453
Target:  5'- uGCCAGCGGgccgcccuuUGGCCGCucGGGcucaggcgacgcUGCGGCCu -3'
miRNA:   3'- -CGGUCGCU---------GCCGGCG--CUC------------AUGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 52633 0.73 0.289394
Target:  5'- cGUCGGCGuugucgcAgGGCCGCccGUGCGACCGg -3'
miRNA:   3'- -CGGUCGC-------UgCCGGCGcuCAUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 52263 0.71 0.383221
Target:  5'- aGCCGGCGAgCGGCCGagucgcauGUucaggcacacgauGCAGCCGa -3'
miRNA:   3'- -CGGUCGCU-GCCGGCgcu-----CA-------------UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 51852 0.68 0.496175
Target:  5'- uGCUgaAGCG-CGGCgccgcgaacgaCGCGAGcACGACCGa -3'
miRNA:   3'- -CGG--UCGCuGCCG-----------GCGCUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 51501 0.66 0.642053
Target:  5'- uCgAGCGGauCGGCCGCaacggcGAG-ACGACCGu -3'
miRNA:   3'- cGgUCGCU--GCCGGCG------CUCaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 51420 0.67 0.588996
Target:  5'- uGCuCGGCGGC-GCgCGCGAGgGCGauACCGu -3'
miRNA:   3'- -CG-GUCGCUGcCG-GCGCUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 51384 0.68 0.547103
Target:  5'- cGCCGGCcaaGGCCGCGccugaccguGUGCA-CCGc -3'
miRNA:   3'- -CGGUCGcugCCGGCGCu--------CAUGUuGGC- -5'
23869 5' -57.7 NC_005262.1 + 50417 0.66 0.619731
Target:  5'- cGCCGcggagcGCGAgGGCCGCGuGcACGucgucguGCCGc -3'
miRNA:   3'- -CGGU------CGCUgCCGGCGCuCaUGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 50353 0.71 0.36709
Target:  5'- cGCCcGCGACGaCCGCGAGcgGCGcauucgucgACCGu -3'
miRNA:   3'- -CGGuCGCUGCcGGCGCUCa-UGU---------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 50293 0.73 0.269608
Target:  5'- aGCCcGUGACGGCCGCGcGGaUugAggaGCCGg -3'
miRNA:   3'- -CGGuCGCUGCCGGCGC-UC-AugU---UGGC- -5'
23869 5' -57.7 NC_005262.1 + 50041 0.72 0.304422
Target:  5'- aGCCGGCGcCGGCUGCucccGAG-ACGaaGCCGg -3'
miRNA:   3'- -CGGUCGCuGCCGGCG----CUCaUGU--UGGC- -5'
23869 5' -57.7 NC_005262.1 + 49856 0.68 0.516311
Target:  5'- uGCCGGCGGCGGUaccggaaGC-AGcuCAGCCGg -3'
miRNA:   3'- -CGGUCGCUGCCGg------CGcUCauGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 49754 0.71 0.36709
Target:  5'- cGCCGGCGGCGcCCGCgcccGAGgcucCGGCCGc -3'
miRNA:   3'- -CGGUCGCUGCcGGCG----CUCau--GUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 49225 0.68 0.526503
Target:  5'- gGCCucGGCGGCGcGCaguccgcgCGCGAGguccGCGACCa -3'
miRNA:   3'- -CGG--UCGCUGC-CG--------GCGCUCa---UGUUGGc -5'
23869 5' -57.7 NC_005262.1 + 48479 0.7 0.419596
Target:  5'- aGCC-GCGugGGCacgggcggCGCGAcgGCAGCCGc -3'
miRNA:   3'- -CGGuCGCugCCG--------GCGCUcaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 48358 0.69 0.447498
Target:  5'- cCCGGCGcugcugGCGGCCGgcuaucaguCGGGuUACGACCGc -3'
miRNA:   3'- cGGUCGC------UGCCGGC---------GCUC-AUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 47715 0.7 0.419596
Target:  5'- cGCCgGGCGGCGGCuCGCcGccuguaucuGGUGCGccGCCGg -3'
miRNA:   3'- -CGG-UCGCUGCCG-GCG-C---------UCAUGU--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.