Results 21 - 40 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23869 | 5' | -57.7 | NC_005262.1 | + | 17237 | 0.67 | 0.588996 |
Target: 5'- gGUCGuCGugGGCguCGCGGGagcgGCGGCCGg -3' miRNA: 3'- -CGGUcGCugCCG--GCGCUCa---UGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 18352 | 0.67 | 0.600631 |
Target: 5'- cGCCGGCGAUGGUUcCGAGcccgcccauaagccCGGCCGa -3' miRNA: 3'- -CGGUCGCUGCCGGcGCUCau------------GUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 3246 | 0.66 | 0.64099 |
Target: 5'- cGCCGGCGucagcgugcccuuGCGGUCGa-AGU-CGACCGu -3' miRNA: 3'- -CGGUCGC-------------UGCCGGCgcUCAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 45951 | 0.66 | 0.662218 |
Target: 5'- aGCUGuCGACGGCCGCGuuuccaucucgccAGUu--GCCGg -3' miRNA: 3'- -CGGUcGCUGCCGGCGC-------------UCAuguUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 16062 | 0.68 | 0.536769 |
Target: 5'- gGCCGGCGGCgcaccagauacaGGCgGCGAGccGCcGCCc -3' miRNA: 3'- -CGGUCGCUG------------CCGgCGCUCa-UGuUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 53085 | 0.67 | 0.578453 |
Target: 5'- --gAGCGcCGGCCGCGuGcgcGCGGCCu -3' miRNA: 3'- cggUCGCuGCCGGCGCuCa--UGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 26989 | 0.67 | 0.610174 |
Target: 5'- cGCCAGUcACGGCCGU---UGCAGCa- -3' miRNA: 3'- -CGGUCGcUGCCGGCGcucAUGUUGgc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 12429 | 0.66 | 0.663278 |
Target: 5'- gGCCGGCGucGCGGaCgGCGcGGUGCcgAGCUGc -3' miRNA: 3'- -CGGUCGC--UGCC-GgCGC-UCAUG--UUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 2141 | 0.67 | 0.578453 |
Target: 5'- uCCAGCG-C-GCCGCG-GUACAGCa- -3' miRNA: 3'- cGGUCGCuGcCGGCGCuCAUGUUGgc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 39233 | 0.66 | 0.672798 |
Target: 5'- -aCGGCGACGGaCGCGAucaGCAggaucacGCCGg -3' miRNA: 3'- cgGUCGCUGCCgGCGCUca-UGU-------UGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 59116 | 0.67 | 0.608052 |
Target: 5'- uGCC-GCGGCccgauccGGCCGCGGcauggcuGUuCAACCGa -3' miRNA: 3'- -CGGuCGCUG-------CCGGCGCU-------CAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 62670 | 0.67 | 0.588996 |
Target: 5'- aGCCcGCaGCGGCCGCaGAGcaagagGCGGCgGa -3' miRNA: 3'- -CGGuCGcUGCCGGCG-CUCa-----UGUUGgC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 63715 | 0.66 | 0.620794 |
Target: 5'- aGCguGCGgcGCGGCCgacuucuucGCGAGccGCGGCCu -3' miRNA: 3'- -CGguCGC--UGCCGG---------CGCUCa-UGUUGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 30880 | 0.66 | 0.631423 |
Target: 5'- cGCUGGCGAgcGUCGCGcGUGCGacGCCGc -3' miRNA: 3'- -CGGUCGCUgcCGGCGCuCAUGU--UGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 3177 | 0.66 | 0.642053 |
Target: 5'- cGCCAGCGuGCGcauggcguucGCCGUGcccuGUAUcGCCGg -3' miRNA: 3'- -CGGUCGC-UGC----------CGGCGCu---CAUGuUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 27476 | 0.66 | 0.652674 |
Target: 5'- uGCCGGCGAgcgcacCGGCCccccacCGAaGU-CGACCGa -3' miRNA: 3'- -CGGUCGCU------GCCGGc-----GCU-CAuGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 36154 | 0.69 | 0.483278 |
Target: 5'- -aCAGCucuuGACGGUaguaggagaggaggCGCGAGUGCAGCuCGa -3' miRNA: 3'- cgGUCG----CUGCCG--------------GCGCUCAUGUUG-GC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 34622 | 0.68 | 0.526503 |
Target: 5'- aGCuCGGCGACGGCCGCcugacgcauGGUcGCGcGCCa -3' miRNA: 3'- -CG-GUCGCUGCCGGCGc--------UCA-UGU-UGGc -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 63039 | 0.67 | 0.5575 |
Target: 5'- cUCGGCGACGaG-CGCGuGUucACGACCGu -3' miRNA: 3'- cGGUCGCUGC-CgGCGCuCA--UGUUGGC- -5' |
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23869 | 5' | -57.7 | NC_005262.1 | + | 42244 | 0.67 | 0.575298 |
Target: 5'- uCCAgGCGGCGGCaucugcuucaggacCGCGAGcUGCA-CCGc -3' miRNA: 3'- cGGU-CGCUGCCG--------------GCGCUC-AUGUuGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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