miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23870 3' -53.7 NC_005262.1 + 17045 0.66 0.819459
Target:  5'- --aGCAGCUCc--GCGAGCUcGuCGCg -3'
miRNA:   3'- cuaCGUCGAGcuaCGUUCGGaCuGCG- -5'
23870 3' -53.7 NC_005262.1 + 36621 0.66 0.819459
Target:  5'- aAUGCGGUUCGGUuGCuGGa-UGGCGCc -3'
miRNA:   3'- cUACGUCGAGCUA-CGuUCggACUGCG- -5'
23870 3' -53.7 NC_005262.1 + 48540 0.66 0.819459
Target:  5'- --cGCGuCUCGAUGCGcaggAGCCgGGcCGCu -3'
miRNA:   3'- cuaCGUcGAGCUACGU----UCGGaCU-GCG- -5'
23870 3' -53.7 NC_005262.1 + 14273 0.66 0.819459
Target:  5'- uGcgGCAGCuccUCGA-GCAGGCCcucGGCGa -3'
miRNA:   3'- -CuaCGUCG---AGCUaCGUUCGGa--CUGCg -5'
23870 3' -53.7 NC_005262.1 + 57695 0.66 0.81852
Target:  5'- --cGCGGCaaGGUGCuuucgguAGGCCgccacGACGCg -3'
miRNA:   3'- cuaCGUCGagCUACG-------UUCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 38056 0.66 0.809979
Target:  5'- --aGCGGCU---UGCcGGCCUG-CGCg -3'
miRNA:   3'- cuaCGUCGAgcuACGuUCGGACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 46541 0.66 0.809979
Target:  5'- --cGCAGCUCGAacagGCGcgucuccucGGCCgaguUGAuCGCg -3'
miRNA:   3'- cuaCGUCGAGCUa---CGU---------UCGG----ACU-GCG- -5'
23870 3' -53.7 NC_005262.1 + 52298 0.66 0.809979
Target:  5'- cGAUGCAGC-CGA-GCucGGC--GACGCg -3'
miRNA:   3'- -CUACGUCGaGCUaCGu-UCGgaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 13989 0.66 0.809979
Target:  5'- --cGCGGC-CGAU-CGGGCCgGACGg -3'
miRNA:   3'- cuaCGUCGaGCUAcGUUCGGaCUGCg -5'
23870 3' -53.7 NC_005262.1 + 9662 0.66 0.809979
Target:  5'- uGAUGU-GCUCGA-GCGAGUaggcgagGGCGCc -3'
miRNA:   3'- -CUACGuCGAGCUaCGUUCGga-----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 61583 0.66 0.809979
Target:  5'- --aGCGGCUucgacgCGAUGUgccgcgcgaucgAAGCCUacgaGACGCa -3'
miRNA:   3'- cuaCGUCGA------GCUACG------------UUCGGA----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 42297 0.66 0.807097
Target:  5'- --cGC-GCUCGGUGCGccacugguacgcauGGCC-GAUGCc -3'
miRNA:   3'- cuaCGuCGAGCUACGU--------------UCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 24343 0.66 0.800307
Target:  5'- cAUGCGGCUCugcgucgGCGcGCCUGAuaccUGCa -3'
miRNA:   3'- cUACGUCGAGcua----CGUuCGGACU----GCG- -5'
23870 3' -53.7 NC_005262.1 + 41580 0.66 0.790454
Target:  5'- --cGCGGCcgugagcuugUCGAgcGCGAGCCcGGCGUu -3'
miRNA:   3'- cuaCGUCG----------AGCUa-CGUUCGGaCUGCG- -5'
23870 3' -53.7 NC_005262.1 + 54412 0.66 0.790454
Target:  5'- cGUGCgcaAGCUCGcggaggcGCAGGCCgccGCGCg -3'
miRNA:   3'- cUACG---UCGAGCua-----CGUUCGGac-UGCG- -5'
23870 3' -53.7 NC_005262.1 + 37738 0.66 0.780432
Target:  5'- --gGaCGGCUUGAUGCGccCCUGcuuGCGCg -3'
miRNA:   3'- cuaC-GUCGAGCUACGUucGGAC---UGCG- -5'
23870 3' -53.7 NC_005262.1 + 17228 0.67 0.77025
Target:  5'- --aGCGGCUCGucGCGaucaacucGGCCgaggaGACGCg -3'
miRNA:   3'- cuaCGUCGAGCuaCGU--------UCGGa----CUGCG- -5'
23870 3' -53.7 NC_005262.1 + 19008 0.67 0.77025
Target:  5'- --cGuCAGCUCGucgaGCucGGCCUGcCGCg -3'
miRNA:   3'- cuaC-GUCGAGCua--CGu-UCGGACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 34084 0.67 0.77025
Target:  5'- gGAUGCuGCUuggccCGGUGCGGGCggUUG-CGCa -3'
miRNA:   3'- -CUACGuCGA-----GCUACGUUCG--GACuGCG- -5'
23870 3' -53.7 NC_005262.1 + 29033 0.67 0.77025
Target:  5'- --cGCcgAGCUCGA-GCGGcGCCggcacGACGCg -3'
miRNA:   3'- cuaCG--UCGAGCUaCGUU-CGGa----CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.