miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 61160 0.66 0.685846
Target:  5'- uCGCgGCGGCGGGCGAG-CUGaCGGGc -3'
miRNA:   3'- -GCGgCGCUGUUCGCUUaGGUgGCCUu -5'
23873 3' -56.7 NC_005262.1 + 17368 0.66 0.685846
Target:  5'- gCGgCGCGGCGGGCc---CCugCGGAc -3'
miRNA:   3'- -GCgGCGCUGUUCGcuuaGGugGCCUu -5'
23873 3' -56.7 NC_005262.1 + 54564 0.66 0.685846
Target:  5'- uCGCCGCGuucGCGAGCGAGg-CGCUGa-- -3'
miRNA:   3'- -GCGGCGC---UGUUCGCUUagGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 5505 0.66 0.66432
Target:  5'- gGCCGCGACGAcCGG----ACCGGGAu -3'
miRNA:   3'- gCGGCGCUGUUcGCUuaggUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 14055 0.66 0.66432
Target:  5'- gCGCCGcCGGCGucgguGCGGcuucggCCGCCGGu- -3'
miRNA:   3'- -GCGGC-GCUGUu----CGCUua----GGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 12118 0.66 0.653508
Target:  5'- cCGCCGUGcgcGCGAGCaGAUCgccgCGCUGGAGa -3'
miRNA:   3'- -GCGGCGC---UGUUCGcUUAG----GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 48675 0.66 0.653508
Target:  5'- aGCUGcCGGCcAGCGcguUCCAgCCGGAc -3'
miRNA:   3'- gCGGC-GCUGuUCGCuu-AGGU-GGCCUu -5'
23873 3' -56.7 NC_005262.1 + 1034 0.66 0.653508
Target:  5'- gGCCGUGGCGuucgacaauaGGCGcGAUCgGcCCGGAGc -3'
miRNA:   3'- gCGGCGCUGU----------UCGC-UUAGgU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 31299 0.66 0.642677
Target:  5'- uCGCgGCGACAAuGgGucuGUCCGCCGa-- -3'
miRNA:   3'- -GCGgCGCUGUU-CgCu--UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 42082 0.67 0.631837
Target:  5'- cCGCCGgccaGAuCGAGaCG-AUCUACCGGAAc -3'
miRNA:   3'- -GCGGCg---CU-GUUC-GCuUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 56955 0.67 0.631837
Target:  5'- -uCCGCG-CGGGCGAGUUCGCgGGc- -3'
miRNA:   3'- gcGGCGCuGUUCGCUUAGGUGgCCuu -5'
23873 3' -56.7 NC_005262.1 + 16055 0.67 0.620997
Target:  5'- uCGCCGCGGCcGGCGGcg-CACCaGAu -3'
miRNA:   3'- -GCGGCGCUGuUCGCUuagGUGGcCUu -5'
23873 3' -56.7 NC_005262.1 + 17565 0.67 0.620997
Target:  5'- aGCCGCGGCGGcgcGCGAAgCCGa-GGAGa -3'
miRNA:   3'- gCGGCGCUGUU---CGCUUaGGUggCCUU- -5'
23873 3' -56.7 NC_005262.1 + 46702 0.67 0.619914
Target:  5'- gCGCCGCGcGCGcaguggacaagccGGCGcAAUCCggcacgACCGGAu -3'
miRNA:   3'- -GCGGCGC-UGU-------------UCGC-UUAGG------UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 28422 0.67 0.610167
Target:  5'- gCGCCGCGuGCGccAGCauauuUCCGCCGGu- -3'
miRNA:   3'- -GCGGCGC-UGU--UCGcuu--AGGUGGCCuu -5'
23873 3' -56.7 NC_005262.1 + 49237 0.67 0.610167
Target:  5'- gCGCCGCGGCGAGaCGccugccGAUCCAgCGc-- -3'
miRNA:   3'- -GCGGCGCUGUUC-GC------UUAGGUgGCcuu -5'
23873 3' -56.7 NC_005262.1 + 8193 0.67 0.610167
Target:  5'- aCGCCGgaaGGCGccgcAGCGAugAUCCGCgCGGGc -3'
miRNA:   3'- -GCGGCg--CUGU----UCGCU--UAGGUG-GCCUu -5'
23873 3' -56.7 NC_005262.1 + 9995 0.67 0.599355
Target:  5'- aGCCuGCuGGCAAGCGAugUCGCCGaGAu -3'
miRNA:   3'- gCGG-CG-CUGUUCGCUuaGGUGGC-CUu -5'
23873 3' -56.7 NC_005262.1 + 23568 0.67 0.57782
Target:  5'- cCGCCGCGcGCGGGCGcAGgagaUCGCCGuGAAa -3'
miRNA:   3'- -GCGGCGC-UGUUCGC-UUa---GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 40240 0.67 0.576747
Target:  5'- cCGCgCGCGGCGGGCGGuuggucaGUCUGCgCGGu- -3'
miRNA:   3'- -GCG-GCGCUGUUCGCU-------UAGGUG-GCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.