miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 5' -59.1 NC_005262.1 + 61057 0.66 0.585423
Target:  5'- aGCGCauccgggaccucgaGGCGcaGGGCgAGCGCUACcGCa -3'
miRNA:   3'- gCGCGg-------------CCGC--UUUGgUCGCGAUG-CGc -5'
23873 5' -59.1 NC_005262.1 + 4089 0.66 0.581227
Target:  5'- -uUGCCGGCGAcg-UAGCGCccGCGUGg -3'
miRNA:   3'- gcGCGGCCGCUuugGUCGCGa-UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 4941 0.66 0.581227
Target:  5'- uGCGCCGGCGugacgucGCCGaucuGCGUgccgaaGCGCc -3'
miRNA:   3'- gCGCGGCCGCuu-----UGGU----CGCGa-----UGCGc -5'
23873 5' -59.1 NC_005262.1 + 24338 0.66 0.581227
Target:  5'- aGaCGCCuGCuu-GCCAGCgaGCUGCGUGg -3'
miRNA:   3'- gC-GCGGcCGcuuUGGUCG--CGAUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 34145 0.66 0.581227
Target:  5'- gGCGCgGGCGGcauGCCGcuCGCUGC-CGa -3'
miRNA:   3'- gCGCGgCCGCUu--UGGUc-GCGAUGcGC- -5'
23873 5' -59.1 NC_005262.1 + 42102 0.66 0.581227
Target:  5'- gCGUGCCcGCGuacAgCAGCGCgGCGCc -3'
miRNA:   3'- -GCGCGGcCGCuu-UgGUCGCGaUGCGc -5'
23873 5' -59.1 NC_005262.1 + 54643 0.66 0.581227
Target:  5'- gGCGCCgGGUGAuccgcauuccGACCGGCcCgGCGCc -3'
miRNA:   3'- gCGCGG-CCGCU----------UUGGUCGcGaUGCGc -5'
23873 5' -59.1 NC_005262.1 + 49186 0.66 0.581227
Target:  5'- gCGCGCaCGGCGAugaucuCCGGCauGCUG-GCc -3'
miRNA:   3'- -GCGCG-GCCGCUuu----GGUCG--CGAUgCGc -5'
23873 5' -59.1 NC_005262.1 + 46634 0.66 0.570765
Target:  5'- uCGCGCgCGGCcuuGCCGGCcuucucgauuGCgACGCGc -3'
miRNA:   3'- -GCGCG-GCCGcuuUGGUCG----------CGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 28723 0.66 0.570765
Target:  5'- -cCGCC-GCGAGGCCGcGCGCccggACGCc -3'
miRNA:   3'- gcGCGGcCGCUUUGGU-CGCGa---UGCGc -5'
23873 5' -59.1 NC_005262.1 + 49715 0.66 0.570765
Target:  5'- gCGUGCCgGGCGGcgAACCGGCgGCcgaagcCGCa -3'
miRNA:   3'- -GCGCGG-CCGCU--UUGGUCG-CGau----GCGc -5'
23873 5' -59.1 NC_005262.1 + 10399 0.66 0.570765
Target:  5'- cCGUGCCGGCGuuguccuuGAACgCGGUcuGCggcagGCGCa -3'
miRNA:   3'- -GCGCGGCCGC--------UUUG-GUCG--CGa----UGCGc -5'
23873 5' -59.1 NC_005262.1 + 42594 0.66 0.570765
Target:  5'- gCGcCGCCGGaCGAccuGACCGGCcuuaucucGCUGC-CGa -3'
miRNA:   3'- -GC-GCGGCC-GCU---UUGGUCG--------CGAUGcGC- -5'
23873 5' -59.1 NC_005262.1 + 12910 0.66 0.570765
Target:  5'- gGCcuGCUGGaCGAcgacAACCuGCGCgGCGCGc -3'
miRNA:   3'- gCG--CGGCC-GCU----UUGGuCGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 9594 0.66 0.570765
Target:  5'- uGCGCCGuGUGcaa-CGGCGCUuucauGCGCu -3'
miRNA:   3'- gCGCGGC-CGCuuugGUCGCGA-----UGCGc -5'
23873 5' -59.1 NC_005262.1 + 20771 0.66 0.570765
Target:  5'- aGCGCCa-CGAGAUC-GCGC-ACGCGc -3'
miRNA:   3'- gCGCGGccGCUUUGGuCGCGaUGCGC- -5'
23873 5' -59.1 NC_005262.1 + 47322 0.66 0.570765
Target:  5'- --aGCUGGCGAccgauUCGGCGCUcgagACGCa -3'
miRNA:   3'- gcgCGGCCGCUuu---GGUCGCGA----UGCGc -5'
23873 5' -59.1 NC_005262.1 + 2049 0.66 0.569722
Target:  5'- gCGCGUa-GCGAgcaucccAGCCAGCG-UGCGCa -3'
miRNA:   3'- -GCGCGgcCGCU-------UUGGUCGCgAUGCGc -5'
23873 5' -59.1 NC_005262.1 + 12978 0.66 0.56035
Target:  5'- gGCGUCGaCGAccgcGACCcGCGCgugACGUGg -3'
miRNA:   3'- gCGCGGCcGCU----UUGGuCGCGa--UGCGC- -5'
23873 5' -59.1 NC_005262.1 + 28161 0.66 0.56035
Target:  5'- aGCGCgCGGCGcAACUGcGCGCg--GCGg -3'
miRNA:   3'- gCGCG-GCCGCuUUGGU-CGCGaugCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.