miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 30260 0.66 0.380938
Target:  5'- aGCUcgacgaccugaacaaGGCCGaGCGGGCAAUcgaGCgCGCUGu -3'
miRNA:   3'- gCGG---------------CCGGC-CGCUCGUUGa--CG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 12550 0.66 0.377591
Target:  5'- gCGgCGGCaggucgCGGCG-GCGcucgucgaGCUGCUGCUGc -3'
miRNA:   3'- -GCgGCCG------GCCGCuCGU--------UGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 63060 0.66 0.377591
Target:  5'- gCGCCGGCaCGucaucGCGGGCGAguaUGCgGCg- -3'
miRNA:   3'- -GCGGCCG-GC-----CGCUCGUUg--ACGgCGac -5'
23874 3' -63.1 NC_005262.1 + 51289 0.66 0.377591
Target:  5'- cCGCCGGCUGcUGcGCA--UGCCGCUc -3'
miRNA:   3'- -GCGGCCGGCcGCuCGUugACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15440 0.66 0.36931
Target:  5'- aGCCGGCC-GCcAGCAGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGcCGcUCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 28542 0.66 0.36931
Target:  5'- uGCCGuucGCCGG-GGGCGcccaGCCGCUGc -3'
miRNA:   3'- gCGGC---CGGCCgCUCGUuga-CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 15769 0.66 0.36685
Target:  5'- uGCCGGCCGGCGAcuuccucaucuucgGCGGCaaccCCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCU--------------CGUUGac--GGCgac -5'
23874 3' -63.1 NC_005262.1 + 50221 0.66 0.365217
Target:  5'- aCGCCGgcuuccaGCCGaGCGgaugccaAGCAACggucgcggccucgaUGCCGCUGc -3'
miRNA:   3'- -GCGGC-------CGGC-CGC-------UCGUUG--------------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 13863 0.66 0.361155
Target:  5'- aCGCCauccgGGCCGGuCGucaGGCGguACUGCUGCc- -3'
miRNA:   3'- -GCGG-----CCGGCC-GC---UCGU--UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 56752 0.66 0.361155
Target:  5'- cCGCCGcGCUGGCGucgGGCGACgaG-CGCUa -3'
miRNA:   3'- -GCGGC-CGGCCGC---UCGUUGa-CgGCGAc -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 43839 0.66 0.353125
Target:  5'- gGCCGGCCGcGCGcGGCGguGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGC-CGC-UCGU--UGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 58716 0.66 0.353125
Target:  5'- cCGCCGaGCCGGuCGcacGCGccGCcGCCGCg- -3'
miRNA:   3'- -GCGGC-CGGCC-GCu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 47408 0.66 0.353125
Target:  5'- gGCCGGCCggGGCGGGUucaaAACUgGuuGCc- -3'
miRNA:   3'- gCGGCCGG--CCGCUCG----UUGA-CggCGac -5'
23874 3' -63.1 NC_005262.1 + 843 0.66 0.353125
Target:  5'- uGUCGGCCGGa-AGCGAC-GCgCGCa- -3'
miRNA:   3'- gCGGCCGGCCgcUCGUUGaCG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 44337 0.66 0.352329
Target:  5'- gGCCGuCCGGUGAGCAucgaggccaacGCccagcgcuucagaUGCCGCg- -3'
miRNA:   3'- gCGGCcGGCCGCUCGU-----------UG-------------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 63018 0.66 0.345223
Target:  5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3'
miRNA:   3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.