miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 56788 0.71 0.159132
Target:  5'- aGCUGGCCGGCcugaaggccgacgucGAGCGGCUGgaGCg- -3'
miRNA:   3'- gCGGCCGGCCG---------------CUCGUUGACggCGac -5'
23874 3' -63.1 NC_005262.1 + 56752 0.66 0.361155
Target:  5'- cCGCCGcGCUGGCGucgGGCGACgaG-CGCUa -3'
miRNA:   3'- -GCGGC-CGGCCGC---UCGUUGa-CgGCGAc -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 53300 0.71 0.157492
Target:  5'- uGCUGGCCGccauGCuGGC-GCUGCUGCUGg -3'
miRNA:   3'- gCGGCCGGC----CGcUCGuUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 52820 0.68 0.266763
Target:  5'- gGCaGGCgcuCGGCGAGCGGCUGaagGCUGc -3'
miRNA:   3'- gCGgCCG---GCCGCUCGUUGACgg-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 52704 0.67 0.300504
Target:  5'- cCGCCGGCCGaCGccggacgaGGCcGC-GCUGCUGa -3'
miRNA:   3'- -GCGGCCGGCcGC--------UCGuUGaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 52582 0.69 0.236152
Target:  5'- aGCCGaGUCGGCGA-CGACUaCCGCg- -3'
miRNA:   3'- gCGGC-CGGCCGCUcGUUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52304 0.66 0.345223
Target:  5'- aGCCGaGCuCGGCGAcGCGGCccaugUGCuCGCg- -3'
miRNA:   3'- gCGGC-CG-GCCGCU-CGUUG-----ACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 52245 0.67 0.300504
Target:  5'- gCGCgCGugaugcacuucaGCCGGCGAGCGGCcgaGUCGCa- -3'
miRNA:   3'- -GCG-GC------------CGGCCGCUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52138 0.71 0.161621
Target:  5'- uGCCGGCCaGCGuGCAGCgcgacgccggcGCCGCc- -3'
miRNA:   3'- gCGGCCGGcCGCuCGUUGa----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 51289 0.66 0.377591
Target:  5'- cCGCCGGCUGcUGcGCA--UGCCGCUc -3'
miRNA:   3'- -GCGGCCGGCcGCuCGUugACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 51216 0.69 0.230395
Target:  5'- aCGCCucGCCGGCGgcagcAGCAGCUcgacgagcgccGCCGCg- -3'
miRNA:   3'- -GCGGc-CGGCCGC-----UCGUUGA-----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50946 0.67 0.322285
Target:  5'- uGCCGGCCGcCGAGCuGaaGCCGaCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCGuUgaCGGC-Gac -5'
23874 3' -63.1 NC_005262.1 + 50838 0.7 0.203365
Target:  5'- aCGCCGaGCCGGUcGGCGA-UGCCGUc- -3'
miRNA:   3'- -GCGGC-CGGCCGcUCGUUgACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50446 0.67 0.329803
Target:  5'- uCGUCGuGCCGcGCGAGgagGACgGCCGCa- -3'
miRNA:   3'- -GCGGC-CGGC-CGCUCg--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50283 0.72 0.131167
Target:  5'- gCGCCGGCCGaGCccGUGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCGGC-CGcuCGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50221 0.66 0.365217
Target:  5'- aCGCCGgcuuccaGCCGaGCGgaugccaAGCAACggucgcggccucgaUGCCGCUGc -3'
miRNA:   3'- -GCGGC-------CGGC-CGC-------UCGUUG--------------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 49883 0.67 0.322285
Target:  5'- aGCCGGCCGGaaaCGGuCGAUUGUCGUc- -3'
miRNA:   3'- gCGGCCGGCC---GCUcGUUGACGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.